Sequence
atgc intronic sequence ATGC exonic sequencegtctgaatcctcagcacatgagctctcttcttactatacaggtcgcgtggactctgaatagctgatggtctgtttttcgcagGGATCTCCCTTCTGTAAATTAGTACGAGAGACACTTGTCGAGTTGGAATTGCCACATCTGCTACACAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM5G804772_T03 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os08g44400.1 (Oryza sativa), 3'ss of exon 9
gtctgaatcctcagcacatgagctctctt---cttactat-----acaggtcgcg--tggactctgaa--tagctgatggtctgtttttcg-cagGGATCTCCCTTCTGTAAATTAGTACGAGAGACACTTGTCGAGTTGGAATTGCCACATCTGCTACACAG
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gtctgaatcctctgcatattgatacgtttgcatttgccgtttcctgtggcttactgccagatccagaatctgaccggtgcatgctttatcatcagGGATCTCCTTTCTGTAAAATAGTACGAGAGACCCTTGTTGAATTAGAGTTGCCACACTTGCTACACAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|67011570|gb|CO440319.1|CO440319EST: ACATTGCTTCAAAAGTCCCACCGCAGCCCATAGAGATATGGGCATGTGAG GGATCTTCCTTCTGTAAATTAGTACGAGAGACACTTGTCGAGTTGGAATTG
genomic: ACATTGCTTCAAAAGTCCCACCGCAGCCCATAGAGATATGGGCATGTGAGgtctgaatcc ... tttttcgcagGGATCTCCCTTCTGTAAATTAGTACGAGAGACACTTGTCGAGTTGGAATTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttcttactatacaggtcgcgtggactctgaatagctgatggtctgtttttcgcagGGATCTCCCTTCTGTAAATTAGTACGAGAGACACTTGTCGAGTTGGAATTGCCACATCTGCTACACAG
tctgtttttc CT-rich tract
tgttttt TA-rich tract