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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatactgaagaagctacaagatagaaacctgtttattaaccttccaaagaaaactgcttattgctttacaagagatgatcacaagtagtacttagaaagtgaataatgtgtacttttgtgctaacaatcaccatgatactgtaggatgtaccttcataaactcaggacaactgacattgttgccaatttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAAAATGTGTCCAATGCAAAGACGTTTCTTGAAAAGAG

Basic information

species Zea mays
transcript GRMZM5G824831_T08
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G824831_T03 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os02g42320.1 (Oryza sativa), 3'ss of exon 6
gtatactgaagaagctacaagatagaaacctgtttattaaccttccaaagaaaactgcttattgctttacaagagatgatcacaagtagtacttagaaagtgaataatgtgtacttttgtgctaacaatcaccatgatactgtaggatgtaccttcataaactcaggacaactgacattgttgccaatttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAAAATGTGTCCAATGCAAAGACGTTTCTTGAAAAGAG
                                                                                                |   |   |  | || |||    |  || |  |||   ||  |   |  | | |    | | |     |  |   | ||  |  |     |||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||| |||||||||||||| ||||||||||| ||
------------------------------------------------------------------------------------------------agttttgttcttctggactgaaattttacctgtcaatttgtcatattttgttatggtgtaaaattggtataatgccagatgtgctgtattatttctacagGTTGATCCCTCAGGATCATACTTCTCCTGGAAAGCATCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAG

upper sequence: GRMZM5G824831_T03 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA08G17810.2 (Glycine max), 3'ss of exon 8
gtatactgaagaagctacaagatagaaacctgtttattaaccttccaaagaaaactgcttattgctttacaagagatgatcacaagtagtacttagaaagtgaataatgtgtacttttgtgctaacaatcaccatgatactgtaggatgtaccttcataaactcaggacaactgacattgttgccaatttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAAAATGTGTCCAATGCAAAGACGTTTCTTGAAAAGAG--------------
                                                                                         ||||  | |  |   |  ||| | | ||||    | | |   |  |||   |  | ||       |   |   |   |  |  |||     ||  |  |||||  |||| ||||| ||||| ||||| || || ||||| || || || ||||| |||||||| || |||||||||||||||||||| |||||              
----------------------------------------------------------------------------------------ctact-gggatctctttgttgt-tgcatttga---agctactgctttgaattttaaagagagggaattgaaggtt---gtgatttgatgcaatttgctttttctgtagGTGGATCCATCAGGTTCATATTTTTCTTGGAAAGCTTCTGCTATGGGGAAAAATGTTTCTAATGCAAAGACGTTTCTTGAGAAGAGGTAAGCTTTTCATC

upper sequence: GRMZM5G824831_T03 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA03G16660.1 (Glycine max), 3'ss of exon 8
gtatactgaagaagctacaagatagaaacctgtttattaaccttccaaagaaaactgcttattgctttacaagagatgatcacaagtagtacttagaaagtgaataatgtgtacttttgtgctaacaatcaccatgatactgtaggatgtaccttcataaactcaggacaactgacattgttgccaatttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAAAATGTGTCCAATGCAAAGACGTTTCTTGAAAAGAG
                                                                                      | ||| |||  |  ||  |||  | ||||  | ||      |     | |  | || ||| |||   || ||    |              || ||     |||||  |||| ||||| ||||| ||||| || || ||||| || || || ||||| |||||||| || ||||||||||| |||||||| |||||
-----------------------------------------------------------------------------------ttattgtatttaagacttgtttaaaat-tactgctttgaattttaaagagagggaattgaaggttgtgatttgatgtgatt------------ttttttttttttttctgtagGTGGATCCATCAGGTTCATATTTTTCTTGGAAAGCTTCTGCTATGGGGAAAAATGTTTCTAATGCAAAGACTTTTCTTGAGAAGAG

upper sequence: GRMZM5G824831_T03 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA01G25940.3 (Glycine max), 3'ss of exon 8
gtatactgaagaagctacaagatagaaacctgtttattaaccttccaaagaaaactgcttattgctttacaagagatgatcacaagtagtacttagaaagtgaataatgtgtacttttgtgctaacaatcaccatgatactgtaggatgtaccttcataaactcaggacaactgacattgttgccaatttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAAAATGTGTCCAATGCAAAGACGTTTCTTGAAAAGAG
                                                                                        | |  ||  |  |  ||| | | ||  | | |    |  |  |||||  |    |||   | | |     ||  |   ||    |||  |  ||     |||||  |||| ||||| || || ||||| || || ||||| || || || ||||| |||||||| || |||||||||||||||||||| |||||
----------------------------------------------------------------------------------------gcagatactatatatata-tatatatatatatatatatgagtaccatt-tgtaatagagggaatcg----aaggttgtgat--ttgatgtgatttgttttttctgtagGTGGATCCATCGGGTTCATATTTTTCTTGGAAAGCTTCTGCTATGGGGAAAAATGTTTCGAATGCAAAGACGTTTCTTGAGAAGAG

upper sequence: GRMZM5G824831_T03 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA08G17810.3 (Glycine max), 3'ss of exon 8
gtatactgaagaagctacaagatagaaacctgtttattaaccttccaaagaaaactgcttattgctttacaagagatgatcacaagtagtacttagaaagtgaataatgtgtacttttgtgctaacaatcaccatgatactgtaggatgtaccttcataaactcaggacaactgacattgttgccaatttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAAAATGTGTCCAATGCAAAGACGTTTCTTGAAAAGAG
                                                                                         ||||  | |  |   |  ||| | | ||||    | | |   |  |||   |  | ||       |   |   |   |  |  |||     ||  |  |||||  |||| ||||| ||||| ||||| || || ||||| || || || ||||| |||||||| || |||||||||||||||||||| |||||
----------------------------------------------------------------------------------------ctact-gggatctctttgttgt-tgcatttga---agctactgctttgaattttaaagagagggaattgaaggtt---gtgatttgatgcaatttgctttttctgtagGTGGATCCATCAGGTTCATATTTTTCTTGGAAAGCTTCTGCTATGGGGAAAAATGTTTCTAATGCAAAGACGTTTCTTGAGAAGAG

upper sequence: GRMZM5G824831_T03 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA15G41330.1 (Glycine max), 3'ss of exon 8
gtatactgaagaagctacaagatagaaacctgtttattaaccttccaaagaaaactgcttattgctttacaagagatgatcacaagtagtacttagaaagtgaataatgtgtacttttgtgctaacaatcaccatgatactgtaggatgtaccttcataaactcaggacaactgacattgttgccaatttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAAAATGTGTCCAATGCAAAGACGTTTCTTGAAAAGAG
                                                                               |     || | | |||  |  ||  ||| || ||||  | |       |     |||  | || ||| |||   || ||              |||  |||||     ||| |  |||| ||||| ||||| ||||| || || ||||| || || || ||||| |||||||| || |||||||||||||||||||| |||||
----------------------------------------------------------------------------ctctttgttgttgcatttaagacttgtttaaagt-tactgctttaaattttaaagagatggaattgaaggttgtgatttgatg-------------tgat-ttgtt-----tttttgtagGTGGATCCATCAGGTTCATATTTTTCTTGGAAAGCTTCTGCTATGGGGAAAAATGTTTCTAATGCAAAGACGTTTCTTGAGAAGAG

upper sequence: GRMZM5G824831_T03 (Zea mays), 3'ss of exon 8
lower sequence: AT1G79210.3 (Arabidopsis thaliana), 3'ss of exon 8
gtatactgaagaagctacaagatagaaacctgtttattaaccttccaaagaaaactgcttattgctttacaagagatgatcacaagtagtacttagaaagtgaataatgtgtacttttgtgctaacaatcaccatgatactgtaggatgtaccttcataaactcaggacaactgacattgttgccaatttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAAAATGTGTCCAATGCAAAGACGTTTCTTGAAAAGAG
                                                                                   |||||| ||||  ||     | ||| |  ||  |  |||| | | | |     |  | |||   || |      | |  ||   | || |  |||||  ||||        |||| ||||| || || || || ||||| ||||| || || || |||||||| ||||| || |||||||||||||||||||| |||||
---------------------------------------------------------------------------------gtaagtagaactttaaag----aaaatata-accatcctgctcaaagtgaagtaaaacccgtaaactgaaaacatcttatttc---ataattttcattg--gcca------ctagGTGGATCCATCTGGCTCTTATTTCTCATGGAAAGCTTCTGCAATGGGAAAGAATGTTTCGAATGCAAAGACGTTTCTTGAGAAGAG

upper sequence: GRMZM5G824831_T03 (Zea mays), 3'ss of exon 8
lower sequence: Vv01s0011g01960.t01 (Vitis vinifera), 3'ss of exon 7
gtatactgaagaagctacaagatagaaacctgtttattaaccttccaaagaaaactgcttattgctttacaagagatgatcacaagtagtacttagaaagtgaataatgtgtacttttgtgctaacaatcaccatgatactgtaggatgtaccttcataaactcaggacaactgacattgttgccaatttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAAAATGTGTCCAATGCAAAGACGTTTCTTGAAAAGAG
                                                                                       | || |    ||||    | | |||  ||||   ||| |   ||  |  ||| ||    |  |  || |  | | |||       | || |  ||    ||  ||  |||| ||||| ||||| ||||| ||||| ||||| || || || ||||| || ||||| || ||||||||||| |||||||| |||||
--------------------------------------------------------------------------------------cattatt--ataagttttgagtctgtttttttaccctatcctgcattagtataatgctacaaatttctgctaatattca------tttacttatttat--atgcctctagGTGGATCCATCAGGTTCATATTTCTCATGGAAAGCCTCCGCAATGGGGAAGAATGTCTCAAATGCAAAGACATTTCTTGAGAAGAG

upper sequence: GRMZM5G824831_T03 (Zea mays), 3'ss of exon 8
lower sequence: PP1S2_595V6.1 (Physcomitrella patens), 3'ss of exon 7
gtatactgaagaagctacaagatagaaacctgtttattaaccttccaaagaaaactgcttattgctttacaagagatgatcacaagtagtacttagaaagtgaataatgtgtacttttgtgctaacaatcaccatgatactgtaggatgtaccttcataaactcaggacaactgacattgttgccaatttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAAAATGTGTCCAATGCAAAGACGTTTCTTGAAAAGAG
                                                                                         | |    |   || ||  || |   |   |   |  || | || || |    | ||  | |  |||  ||   | |   | |   | |    ||  | |   | ||||| ||||| ||||||||||||||||| |||||||||||||| || || || |||||||| ||||| ||||| ||  | || || ||
-----------------------------------------------------------------------------------------tccaagaattctgcatgttgcgggttagggccatgtcatttacaatta----ggagcttat-tctttttacggttaattcgatgtaaac--atgatattaagtgcagGTAGATCCATCAGGATCATACTTCTCATGGAAGGCATCAGCAATTGGCAAGAATGTGTCTAATGCGAAGACTTTCTTAGAGAAAAG

upper sequence: GRMZM5G824831_T03 (Zea mays), 3'ss of exon 8
lower sequence: PP1S61_202V6.1 (Physcomitrella patens), 3'ss of exon 7
gtatactgaagaagctacaagatagaaacctgtttattaaccttccaaagaaaactgcttattgctttacaagagatgatcacaagtagtacttagaaagtgaataatgtgtacttttgtgctaacaatcaccatgatactgtaggatgtaccttcataaactcaggacaactgacattgttgccaatttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAAAATGTGTCCAATGCAAAGACGTTTCTTGAAAAGAG
                                                                                          ||||  |  | || | || || |   | | |  |    |    |  | |||| ||| | ||  |  ||   || |  |  | ||  ||| | || |||||   ||||| ||||| |||||||| |||||||| |||||||||||||| || || || |||||||||||||| ||||| || || || || ||
----------------------------------------------------------------------------------------tgacttgaatggagagtcatttgcagggtagggtcat--gttgtta-aaaactggagg-tttatttgaatgtgcttaacaaga-tgtgattttggcaaattt---cagGTGGATCCTTCAGGATCGTACTTCTCATGGAAGGCATCAGCAATAGGCAAGAATGTGTCCAATGCCAAGACTTTCCTAGAGAAAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148956338|gb|EC902144.2|EC902144
EST:     TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
EST: gi|148952476|gb|EC898302.2|EC898302
EST:     TATCACTGTTGATTGCTGGGTATGATGACAATGACCCGCAGTTGTATCAC                         GATGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCA
EST: gi|71447361|gb|DR828411.1|DR828411
EST:     TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
EST: gi|211269953|gb|FL444406.1|FL444406
EST:     TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTTTCCTGGAAGGCATCAGCCATGGGAAAA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
EST: gi|149076954|gb|EE165611.2|EE165611
EST:     TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
EST: gi|211264909|gb|FL208725.1|FL208725
EST:     TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAG                         GTTGATCCCTCAAGATCATA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATA
EST: gi|6952542|gb|AW424610.1|AW424610
EST:     TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
EST: gi|148973074|gb|EE024136.2|EE024136
EST:     ATGGCCCGCAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGNNNNN
genomic: ATGGCCCGCAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
EST: gi|78112696|gb|DV531090.1|DV531090
EST:     TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
EST: gi|148987620|gb|EE031494.2|EE031494
EST:     TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATC
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATC
EST: gi|5268558|gb|AI770522.1|AI770522
EST:     TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAC                         GTTGATCCCTCAGGATCATACTTCTCCTGTAAGGCATCAGCCATGGTAAAA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
EST: gi|71445140|gb|DR826190.1|DR826190
EST:     TATCACTGTTGATTGCTGGGTATGATGACCATGGCCCGCAGTTGTATCAA                         GTTGATCCCTCAGGATCATACTTCTCCCTGGA-GGCATCAGCCATGGGAAA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCC-TGGAAGGCATCAGCCATGGGAAA
EST: gi|211149323|gb|FL312581.1|FL312581
EST:     TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
EST: gi|32830197|gb|CD969875.1|CD969875
EST:     TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
EST: gi|211252215|gb|FK953396.1|FK953396
EST:     TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
EST: gi|6194486|gb|AW146590.1|AW146590
EST:     TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAG                         GTTGATCCCTCCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTC-AGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAA
EST: gi|78112697|gb|DV531091.1|DV531091
EST:     TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAANGCATCAGCCATGGGAAAA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
EST: gi|67024880|gb|CO453629.1|CO453629
EST:     TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
EST: gi|32795340|gb|CD947576.1|CD947576
EST:     TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
EST: gi|211321302|gb|FL273340.1|FL273340
EST:     TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
EST: gi|211153309|gb|FL164197.1|FL164197
EST:     TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaggatgtaccttcataaactcaggacaactgacattgttgccaatttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAAAATGTGTCCAATGCAAAGACGTTTCTTGAAAAGAG
                            aactgac  putative branch site (score: 2)
                                              tttcttc  putative PPT
            ttcataaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatactgaagaagctacaagatagaaacctgtttattaaccttccaaagaaaactgcttattgctttacaagagatgatcacaagtagtacttagaaagtgaataatgtgtacttttgtgctaacaatcaccatgatactgtaggatgtaccttcataaactcaggacaactgacattgttgccaatttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAAAATGTGTCCAATGCAAAGACGTTTCTTGAAAAGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAAG