1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtacgtgcaatacaatcttaaataccccactccgtataacgtaactatatatatgtaagcataagctcgtggttgttctcttgcagCAATTTCTATTGGGAGGAGGTACGCCAGGACGGATGAGATCGGTGTTCCATTTGCTGTAACAGTGGATTCGGCAACGAACGTGACGATCCGAGAGAGGGA
species | Zea mays |
transcript | GRMZM5G821551_T03 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AACTGCTGGTATCTCCCACATTATTGACACTACTG CAATTTCTATTGGGAGGAGGTACGCCAGGACGGATGAGATCEST: gi|32945629|gb|CF050448.1|CF050448
genomic: AACTGCTGGTATCTCCCACATTATTGACACTACTGgtacgtgcaa ... tctcttgcagCAATTTCTATTGGGAGGAGGTACGCCAGGACGGATGAGATC
EST: CGCCAAGGCATTAACAACTGCTGGTATCTCCCACATTATTGACACTACTG CAATTTCTATTGGGAGGAGGTEST: gi|32825878|gb|CD965556.1|CD965556
genomic: CGCCAAGGCATTAACAACTGCTGGTATCTCCCACATTATTGACACTACTGgtacgtgcaa ... tctcttgcagCAATTTCTATTGGGAGGAGGT
EST: TAACAACTGCTGGTATCTCCCACATTATTGACACTACTG CAATTTCTATTGGGAGGAGGTACGCCAGGACGGATGAGATCEST: gi|86465963|gb|DY232336.1|DY232336
genomic: TAACAACTGCTGGTATCTCCCACATTATTGACACTACTGgtacgtgcaa ... tctcttgcagCAATTTCTATTGGGAGGAGGTACGCCAGGACGGATGAGATC
EST: CGCCAAGGCATTAACAACTGCTGGTATCTCCCACATTATTGACACTACTG CAATTTCTATTGGGAGGAGGTACGCCAGGACGGATGAGATCGGTGTTTCATEST: gi|32850719|gb|CD990400.1|CD990400
genomic: CGCCAAGGCATTAACAACTGCTGGTATCTCCCACATTATTGACACTACTGgtacgtgcaa ... tctcttgcagCAATTTCTATTGGGAGGAGGTACGCCAGGACGGATGAGATCGGTGTTCCAT
EST: CGCCAAGGCATTAACAACTGCTGGTATCTCCCACATTATTGACACTACTG CAATTTCTATTGGGAGGAGGTAEST: gi|60395019|gb|DN227888.1|DN227888
genomic: CGCCAAGGCATTAACAACTGCTGGTATCTCCCACATTATTGACACTACTGgtacgtgcaa ... tctcttgcagCAATTTCTATTGGGAGGAGGTA
EST: CGCCAAGGCATTAACAACTGCTGGTATCTCCCACATTATTGACACTACTG CAATTTCTATTGGGAGGAGGTACGCCAGGACGGATGAGATCGGTGTTCCATEST: gi|32867016|gb|CF006698.1|CF006698
genomic: CGCCAAGGCATTAACAACTGCTGGTATCTCCCACATTATTGACACTACTGgtacgtgcaa ... tctcttgcagCAATTTCTATTGGGAGGAGGTACGCCAGGACGGATGAGATCGGTGTTCCAT
EST: CGCCAAGGCATTAACAACTGCTGGTATCTCCCACATTATTGACACTACTG CAATTTCTATTGGGAGGAGGTACGCCAGGACGGATGAGATCGGTGTTCCAT
genomic: CGCCAAGGCATTAACAACTGCTGGTATCTCCCACATTATTGACACTACTGgtacgtgcaa ... tctcttgcagCAATTTCTATTGGGAGGAGGTACGCCAGGACGGATGAGATCGGTGTTCCAT
ccgtataacgtaactatatatatgtaagcataagctcgtggttgttctcttgcagCAATTTCTATTGGGAGGAGGTACGCCAGGACGGATGAGATCGGTGTTCCATTTGCTGTAACAGTGGATTCGGCAACGAACGTGACGATCCGAGAGAGGGA
acgtaac putative branch site (score: 50)
ttgttctctt putative PPT
taactatatatatgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtgcaatacaatcttaaataccccactccgtataacgtaactatatatatgtaagcataagctcgtggttgttctcttgcagCAATTTCTATTGGGAGGAGGTACGCCAGGACGGATGAGATCGGTGTTCCATTTGCTGTAACAGTGGATTCGGCAACGAACGTGACGATCCGAGAGAGGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG