1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ctcgtccgaacccatcatttcttagcactttttatcctcccaacattgtttatgcctggcacattctcatcagaataatcgactattcggccaatgtcagGTGAAAAGCTATTGGCTAAACTCGGATGGAGCAGACGTGATCAACCACATGATGGACAATTTCATCGTCTAGTCCATGGAGGCATGAAGCCTACGTTGTG
species | Zea mays |
transcript | GRMZM5G820727_T07 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGAGCTTCCAGAAAAGCACCCAAAGATTAGTTGCGCATAACACAATTCAG GTGAAAAGCTATTGGCTAAACTCGGATGGAGCAGACGTGATCAACCACATGEST: gi|88756288|gb|DY540429.1|DY540429
genomic: TGAGCTTCCAGAAAAGCACCCAAAGATTAGTTGCGCATAACACAATTCAGgtaaatttta ... ccaatgtcagGTGAAAAGCTATTGGCTAAACTCGGATGGAGCAGACGTGATCAACCACATG
EST: TGAGCTTCCAGAAAAGCACCCAAAGATTAGTTGCGCATAACACAATTCAG GTGAAAAGCTATTGGCTAAACTCGGATGGAGCAGACGTGATCAACCACATGEST: gi|78106691|gb|DV525109.1|DV525109
genomic: TGAGCTTCCAGAAAAGCACCCAAAGATTAGTTGCGCATAACACAATTCAGgtaaatttta ... ccaatgtcagGTGAAAAGCTATTGGCTAAACTCGGATGGAGCAGACGTGATCAACCACATG
EST: TGAGCTTCCAGAAAAGCACCCAAAGATTAGTTGCGCATAACACAATTCAG GTGAAAAGCTATTGGCTAAACTCGGATGGAGCAGACGTGATCAACCACATGEST: gi|13150647|gb|BG320969.1|BG320969
genomic: TGAGCTTCCAGAAAAGCACCCAAAGATTAGTTGCGCATAACACAATTCAGgtaaatttta ... ccaatgtcagGTGAAAAGCTATTGGCTAAACTCGGATGGAGCAGACGTGATCAACCACATG
EST: TGAGCTTCCAGAAAAGCACCCAAAGATTAGTTGCGCATAACACAATTCAG GTGAAAAGCTATTGGCTAAACTCGGATGGAGCAGACGTGATCAACCACATGEST: gi|13150303|gb|BG320625.1|BG320625
genomic: TGAGCTTCCAGAAAAGCACCCAAAGATTAGTTGCGCATAACACAATTCAGgtaaatttta ... ccaatgtcagGTGAAAAGCTATTGGCTAAACTCGGATGGAGCAGACGTGATCAACCACATG
EST: TGAGCTTCCAGAAAAGCACCCAAAGATTAGTTGCGCATAACACAATTCAG GTGAAAAGCTATTGGCTAAACTCGGATGGAGCAGACGTGATCAACCACATG
genomic: TGAGCTTCCAGAAAAGCACCCAAAGATTAGTTGCGCATAACACAATTCAGgtaaatttta ... ccaatgtcagGTGAAAAGCTATTGGCTAAACTCGGATGGAGCAGACGTGATCAACCACATG
ttgtttatgcctggcacattctcatcagaataatcgactattcggccaatgtcagGTGAAAAGCTATTGGCTAAACTCGGATGGAGCAGACGTGATCAACCACATGATGGACAATTTCATCGTCTAGTCCATGGAGGCATGAAGCCTACGTTGTG
agaataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctcgtccgaacccatcatttcttagcactttttatcctcccaacattgtttatgcctggcacattctcatcagaataatcgactattcggccaatgtcagGTGAAAAGCTATTGGCTAAACTCGGATGGAGCAGACGTGATCAACCACATGATGGACAATTTCATCGTCTAGTCCATGGAGGCATGAAGCCTACGTTGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC