Sequence
atgc intronic sequence ATGC exonic sequence...agaacattataattattacttcaaattaggctgttagtttatcccgaactccacaattgattgtttaacaacagctgataaaaatcctttttatatgcagAGGAGATGATAAGAGGCCTTACGCAAGTTCCGTGGGAACGTGTTGATGTGAGCTTCCAGAAAAGCACCCAAAGATTAGTTGCGCATAACACAATTCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM5G820727_T02 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os08g34750.1 (Oryza sativa), 3'ss of exon 8
agaacattataattattacttcaaattaggctgttagtttatcccgaact-ccacaattgattgtttaacaacagctgataaaaatcctttttatatgcagAGGAGATGATAAGAGGCCTTACGCAAGTTCCGTGGGAACGTGTTGATGTGAGCTTCCAGAAAAGCACCCAAAGATTAGTTGCGCATAACACAATTCAG
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------------gtatatttttctgtt----tgttagtt-accccgaactgtcaaagttgattgttcatcaatagatgacaaaaatcccttctatttgcagAGGAGATGATTAGAGGCCTTACACAAGTACCGTGGGAACGTGTTGATGTGAGCTTCCAGAAAAGTAGTCAAAGATTGGTTGCGCATAACACCATCCAG
upper sequence: GRMZM5G820727_T02 (Zea mays), 3'ss of exon 8
lower sequence: Vv11s0052g01660.t01 (Vitis vinifera), 3'ss of exon 8
agaacattataattattacttcaaat-taggctgttagtttatcccgaactccacaattgattgtttaacaacagctga-taaaaatcctttttatatgcagAGGAGATGATAAGAGGCCTTACGCAAGTTCCGTGGGAACGTGTTGATGTGAGCTTCCAGAAAAGCACCCAAAGATTAGTTGCGCATAACACAATTCAG
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-atgctctgtcaacattgttttatacatatgccacgagtt-acaaagtttttttcctttcctgtttttttattttctgagtagtcttctttcttatatgcagAGGAAATGATTCAAGGCCTTACCCAAGTACCTTGGGAACGTGTGGATGTTAGCTTTCACAAAAGTAGGCAACGATATGTTGCACATAATACCATTCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gaactccacaattgattgtttaacaacagctgataaaaatcctttttatatgcagAGGAGATGATAAGAGGCCTTACGCAAGTTCCGTGGGAACGTGTTGATGTGAGCTTCCAGAAAAGCACCCAAAGATTAGTTGCGCATAACACAATTCAG
tcctttttat CT-rich tract
tgataaaaatcctttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
agaacattataattattacttcaaattaggctgttagtttatcccgaactccacaattgattgtttaacaacagctgataaaaatcctttttatatgcagAGGAGATGATAAGAGGCCTTACGCAAGTTCCGTGGGAACGTGTTGATGTGAGCTTCCAGAAAAGCACCCAAAGATTAGTTGCGCATAACACAATTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT