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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagcctccctctctttttttcagtttgtatattttcttggttgtataatactagtggttgcttactgttgatttttatatgcagTTACTTGATGACAAGCAGGGCGAAAATATCTGGCGGTTTCTTCACTCAATAAACGA

Basic information

species Zea mays
transcript GRMZM5G813363_T03
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G813363_T02 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os05g10740.1 (Oryza sativa), 3'ss of exon 8
gttag--cctccctctctttttttcagtttgtatattttcttggttgtataatactagtggttgcttac--tgttgatttttat-atgcagTTACTTGATGACAAGCAGGGCGAAAATATCTGGCGGTTTCTTCACTCAATAAACGA
|||||  |||   |  |      | |  ||   |  | ||||| |||| | | |  |     ||    |  | || ||||||||  ||||||| |||||||| | |||||| |||||||||||||||||||||||||| ||||| ||
gttagttccttattgccaaaccatgaaattcctttatatcttg-ttgtttcaaatcataaactgaaggcgttatttatttttattgtgcagTTGCTTGATGAGAGGCAGGGTGAAAATATCTGGCGGTTTCTTCACTCGATAAATGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91872830|gb|EB402787.1|EB402787
EST:     GTGGGGATGCACAGTGTCCTGAATCCGACATAGTGCGAGCCAGTAGAAGT                         TTACTTGATGACAAGCAGGGCGAAAATATCTGGCGGTTTCTTCACTCAATN
genomic: GTGGGGATGCACAGTGTCCTGAATCCGACATAGTGCGAGCCAGTAGAAGTgttagcctcc ... ttatatgcagTTACTTGATGACAAGCAGGGCGAAAATATCTGGCGGTTTCTTCACTCAATA
EST: gi|71322272|gb|DR797821.1|DR797821
EST:     GTGGGGATGCACAGTGTCCTGAATCCGACATAGTGCGAGCCAGTAGAAGT                         TTACTTGATGACAAGCAGGGCGAAAATATCTGGCGGTTTCTTCACTCAATA
genomic: GTGGGGATGCACAGTGTCCTGAATCCGACATAGTGCGAGCCAGTAGAAGTgttagcctcc ... ttatatgcagTTACTTGATGACAAGCAGGGCGAAAATATCTGGCGGTTTCTTCACTCAATA
EST: gi|88749046|gb|DY533187.1|DY533187
EST:     GTGGGGATGCACAGTGTCCTGAATCCGACATAGTGCGAGCCAGTAGAAGT                         TTATTTGATGACAAGCAGGGCGAATATATCTGGCGGTTTCTTCTCTCAATA
genomic: GTGGGGATGCACAGTGTCCTGAATCCGACATAGTGCGAGCCAGTAGAAGTgttagcctcc ... ttatatgcagTTACTTGATGACAAGCAGGGCGAAAATATCTGGCGGTTTCTTCACTCAATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattttcttggttgtataatactagtggttgcttactgttgatttttatatgcagTTACTTGATGACAAGCAGGGCGAAAATATCTGGCGGTTTCTTCACTCAATAAACGA
                                          tttttat  CT-rich tract
                                    tgttgatttttatat  TA-rich tract