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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacaagttgataactcagtagcaacatttcagtaactcataagatgtaattgaaaatgtcggtgcagcttcggcagtacattgttattctaacttaatgcttatctttaagGTGAAAGAAAGGCTTGGTGGGAAATTAAGAGTTATTGTATCTGGAGGTGCTCCTCTAGCTGTACCAGTAGAAGAATTTTTAAGGGTTGTGACATGTGCTT

Basic information

species Zea mays
transcript GRMZM5G812228_T01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G812228_T01 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os06g06350.2 (Oryza sativa), 3'ss of exon 8
gtacaagttgataactcagtagcaacatttcagtaactcataagatgtaattgaaaatgtcggtgcagcttcggcagtacattgttattctaacttaatgcttatctttaagGTGAAAGAAAGGCTTGGTGGGAAATTAAGAGTTATTGTATCTGGAGGTGCTCCTCTAGCTGTACCAGTAGAAGAATTTTTAAGGGTTGTGACATGTGCTT
|||||| | | ||  |||| ||||   ||| |  |  |||| ||||  |||| | | ||||  |||| ||||    ||| ||  ||   |||||||| || ||||| || ||||||||||||| || ||||| ||| || |  |||| || ||||| ||||| ||| || ||||| |||| ||||||||||| |||||||||||||||||  
gtacaattagctagttcaggagcatttttttatcacttcatcagataaaatttagactgtcaatgcatcttcatatgtatatcattgccctaacttagtgtttatcctttagGTGAAAGAAAGACTGGGTGGAAAACTACGTTTTATCGTGTCTGGTGGTGCCCCTTTATCTGTAGCAGTGGAAGAATTTTTGAGGGTTGTGACATGTGCAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtcggtgcagcttcggcagtacattgttattctaacttaatgcttatctttaagGTGAAAGAAAGGCTTGGTGGGAAATTAAGAGTTATTGTATCTGGAGGTGCTCCTCTAGCTGTACCAGTAGAAGAATTTTTAAGGGTTGTGACATGTGCTT
                                           cttatcttt  CT-rich tract
                           ttattctaacttaat  TA-rich tract