1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...cttataggcaccacaatgcagtgcctgttgaaaaattacaacgacataccatttttagactgacatcttatgttgcttgtgtgcgaaaccaattctgcagAATCCTTGGGAGCTCATAAATTTCTCGAGTCCTGCAACAATTCACATGGATTCCTTCTTATCGGTCTTCAATATCGCTGGCTTGCATGATGAGCTGTACC
species | Zea mays |
transcript | GRMZM5G807767_T03 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GTGGCGTCAACAGCAAATTTATGGAAAGATATGGGTTCTCATCACCAACG AATCCTTGGGAGCTCATAAATTTCTCGAGTCCTGCAACAATTCACATGGATEST: gi|211151156|gb|FL467091.1|FL467091
genomic: GTGGCGTCAACAGCAAATTTATGGAAAGATATGGGTTCTCATCACCAACGgtatgaccac ... aattctgcagAATCCTTGGGAGCTCATAAATTTCTCGAGTCCTGCAACAATTCACATGGAT
EST: GTGGCGTCAACAGCAAATTTATGGAAAGATATGGGTTCTCATCACCAACG AATCCTTGGGAGCTCATAAATTTCTCGAGTCCTGCAACAATTCACATGGATEST: gi|108953379|gb|EC364711.1|EC364711
genomic: GTGGCGTCAACAGCAAATTTATGGAAAGATATGGGTTCTCATCACCAACGgtatgaccac ... aattctgcagAATCCTTGGGAGCTCATAAATTTCTCGAGTCCTGCAACAATTCACATGGAT
EST: GTGGCGTCAACAGCAAATTTGTGGAAAGATATGGGTTCTCATCACCAACG AATCCTTGGGAGCTCATAAATTTCTCGAGTCCTGCAACAATTCACATGGATEST: gi|13557817|gb|BG549173.1|BG549173
genomic: GTGGCGTCAACAGCAAATTTATGGAAAGATATGGGTTCTCATCACCAACGgtatgaccac ... aattctgcagAATCCTTGGGAGCTCATAAATTTCTCGAGTCCTGCAACAATTCACATGGAT
EST: GTGGCGTCAACAGCAAATTTATGGAAAGATATGGGTTCTCATCACCAACG AATCCTTGGGAGCTCATAAATTTCTCGAGTCCTGCAEST: gi|211112501|gb|FL459338.1|FL459338
genomic: GTGGCGTCAACAGCAAATTTATGGAAAGATATGGGTTCTCATCACCAACGgtatgaccac ... aattctgcagAATCCTTGGGAGCTCATAAATTTCTCGAGTCCTGCA
EST: GTGGCGTCAACAGCAAATTTGTGGAAAGATATGGGTTCTCATCACCAACG AATCCTTGGGAGCTCATAAATTTCTCGAGTCCTGCAACAATTCACATGGATEST: gi|211112500|gb|FL459337.1|FL459337
genomic: GTGGCGTCAACAGCAAATTTATGGAAAGATATGGGTTCTCATCACCAACGgtatgaccac ... aattctgcagAATCCTTGGGAGCTCATAAATTTCTCGAGTCCTGCAACAATTCACATGGAT
EST: GTGGCGTCAACAGCAAATTTGTGGAAAGATATGGGTTCTCATCACCAACG AATCCTTGGGAGCTCATAAATTTCTCGAGTCCTGCAACAATTCACATGGAT
genomic: GTGGCGTCAACAGCAAATTTATGGAAAGATATGGGTTCTCATCACCAACGgtatgaccac ... aattctgcagAATCCTTGGGAGCTCATAAATTTCTCGAGTCCTGCAACAATTCACATGGAT
ataccatttttagactgacatcttatgttgcttgtgtgcgaaaccaattctgcagAATCCTTGGGAGCTCATAAATTTCTCGAGTCCTGCAACAATTCACATGGATTCCTTCTTATCGGTCTTCAATATCGCTGGCTTGCATGATGAGCTGTACC
gactgac putative branch site (score: 2)
atttttaga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttataggcaccacaatgcagtgcctgttgaaaaattacaacgacataccatttttagactgacatcttatgttgcttgtgtgcgaaaccaattctgcagAATCCTTGGGAGCTCATAAATTTCTCGAGTCCTGCAACAATTCACATGGATTCCTTCTTATCGGTCTTCAATATCGCTGGCTTGCATGATGAGCTGTACC
- - - - caccaca
- - - - - - - - tgcagtg
- - - - - - - - - - - -cctgttg
- - - - - - - - - - - - - - - - - - - -aacgaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgct