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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gacctgttattgttaacaattgggaagctcatgatgttagtcttctgaatagaagcgagaaatttaggatcgttattgtagactgttcactccaatgcagGTTTTGCATCCACAATCGATGAGACCTGCTAGAGAAGGTGATATTCCAGTTATGGTTAAGAATTCATACAACGCTAAAGCTCCAGGAACCATTATTACAA

Basic information

species Zea mays
transcript GRMZM2G700866_T02
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G700866_T02 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os01g70300.2 (Oryza sativa), 3'ss of exon 7
-gacctgttattgttaacaattgggaagctcatgatgttagtcttctgaatagaagcgagaaatttaggatcgttattgtagactgtt-cactccaatgcagGTTTTGCATCCACAATCGATGAGACCTGCTAGAGAAGGTGATATTCCAGTTATGGTTAAGAATTCATACAACGCTAAAGCTCCAGGAACCATTATTACAA
 ||   |   ||| | || ||  |  |  | | | || |  ||    |  |||||  ||||| |||  | |  |  |  |  | ||||   |||||    |||| || ||||||||||| |||||||||||||||||||||||||| ||||| | |||||||||||| |||||| ||||||||||||| ||| | || || |
tgataagggtttgctcactat--gtcaatttaagttgctcttcgcacgtttagaaaagagaacttttagttgatagtaatgcattgttgtgctccatgatagGTATTACATCCACAATCTATGAGACCTGCTAGAGAAGGTGATATACCAGTCAGGGTTAAGAATTCGTACAACCCTAAAGCTCCAGGCACCCTGATCACTA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaatagaagcgagaaatttaggatcgttattgtagactgttcactccaatgcagGTTTTGCATCCACAATCGATGAGACCTGCTAGAGAAGGTGATATTCCAGTTATGGTTAAGAATTCATACAACGCTAAAGCTCCAGGAACCATTATTACAA
                                        ttcactcc  CT-rich tract
            agaaattta  TA-rich tract