Sequence
atgc intronic sequence ATGC exonic sequence...nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcggatgaaatcagcttgattcgttcccgaatgttgctgatgccattcttgctaatggtatgttcagTCATTATGATCGCCCTCGTATTGCTCAGCTGTGTGAAAAGGCTGGGTTGTACTTGCGAGCCCTCCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G591258_T01 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA01G38580.1 (Glycine max), 3'ss of exon 16
----------------------------------------------------------------------nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcggatgaaatcag-cttgattcgttcccgaatgttgctgatgccattcttgctaatggtatgttcagTCATTATGATCGCCCTCGTATTGCTCAGCTGTGTGAAAAGGCTGGGTTGTACTTGCGAGCCCTCCAG
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gttctttttattttctgtgccattatctctgtccctgaactgaatcagatggtgatatatttagatttttttcaaatctcaattttccatgttttatttttagGTTCTGGAAATTAATCTTGTGACCTTTCCAAATGTTGCTGATGCTATATTGGCCAATGGCATGTTCAGTCATTATGATCGCCCACGTATTGGACAACTAT-----------------------------------
upper sequence: GRMZM2G591258_T01 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA02G42560.1 (Glycine max), 3'ss of exon 16
---------------------------------------------------------nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcggatgaaatcagcttgatt-cgttcccgaatgttgctgatgccattcttgctaatggtatgttcagTCATTATGATCGCCCTCGTATTGCTCAGCTGTGTGAAAAGGCTGGGTTGTACTTGCGAGCCCTCCAG
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gtgtgtggcctttgtttctcatccgttatgggcattctactctgaaaattctttctttgaactgttacgatcttgtgaattgctgttcagGTGTTGGAGATAAATCTGGTGACTTTCCCCAATGTTGCTGATGCAATATTGGCTAATGGCATGTTCAGCCATTATGACCGTCCTCGTATTGCCCAGCTTT-----------------------------------
upper sequence: GRMZM2G591258_T01 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA14G06340.2 (Glycine max), 3'ss of exon 16
-------------------------------------------------------nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcggatgaaatcagcttgatt-cgttcccgaatgttgctgatgccattcttgctaatggtatgttcagTCATTATGATCGCCCTCGTATTGCTCAGCTGTGTGAAAAGGCTGGGTTGTACTTGCGAGCCCTCCAG
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gtgtggcctttgtttctcatctgttatgggcattttactctgaaaattctttctttgaagtgttacgatgttgtgaatcactgttcagGTGTTGGAGATAAATCTGGTGACTTTCCCCAATGTTGCTGATGCAATATTGGCTAATGGCATGTTCAGCCATTATGACCGTCCTCGTATTGCCCAACTTT-----------------------------------
upper sequence: GRMZM2G591258_T01 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA11G06720.1 (Glycine max), 3'ss of exon 16
------------------------------------------------------------------nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcggatgaaatcag-cttgattcgttcccgaatgttgctgatgccattcttgctaatggtatgttcagTCATTATGATCGCCCTCGTATTGCTCAGCTGTGTGAAAAGGCTGGGTTGTACTTGCGAGCCCTCCAG
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gttcttttattttctgtgccattatctctgtccctgaaccagatagtgatatatttagattttttttttataattacaatttccatgttttgtttttagGTTCTGGAAATTAATCTTGTGACCTTTCCAAATGTTGCTGATGCTATATTGGCCAATGGCATGTTCAGTCATTATGATTGCCCACGTATTGGACAACTAT-----------------------------------
upper sequence: GRMZM2G591258_T01 (Zea mays), 3'ss of exon 8
lower sequence: Vv06s0004g06860.t01 (Vitis vinifera), 3'ss of exon 16
----------------------------------------------nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcggatgaaatcagcttgatt-cgttcccgaatgttgctgatgccattcttgctaatggtatgttcagTCATTATGATCGCCCTCGTATTGCTCAGCTGTGTGAAAAGGCTGGGTTGTACTTGCGAGCCCTCCAG
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gtcgatctatttttttttcctaaatgaatttttatatagtttctttagttctgcttcctaataattctgctctattcagGTTTTGGAAATCAATCTGGTTACATTTCCAAATGTCGCAGATGCTATATTAGCTAATGGTATGTTTAGTCACTATGATCGCCCACGTATTGCACAGCTCT-----------------------------------
upper sequence: GRMZM2G591258_T01 (Zea mays), 3'ss of exon 8
lower sequence: PP1S452_30V6.1 (Physcomitrella patens), 3'ss of exon 17
------------------------------------------------------------------------------------------------------------------------------------------------------------nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcggatgaaatcagcttgatt-cgttcccgaatgttgctgatgccattcttgctaatggtatgttcagTCATTATGATCGCCCTCGTATTGCTCAGCTGTGTGAAAAGGCTGGGTTGTACTTGCGAGCCCTCCAG
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gtgtgtgttggcttgctgcaagctacgactttgtagtactatcaggacattggaatcagttcagtatttgtcatgctagttatctccattactcctactaatgaatctaggggagtttttatgtacattatcttttaaaattcgaaatgacctaagtttctgatatttagattgatgtcacattctcagGTACTGGAGATCAATTTGGTCACATTTCCCAATGTGGCTGATGCAATTCTGGCGAATGGCATGTTCTCCCATTATGATCGTCCTCGCATTGCTCAACTCT----------------------------------- atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agcttgattcgttcccgaatgttgctgatgccattcttgctaatggtatgttcagTCATTATGATCGCCCTCGTATTGCTCAGCTGTGTGAAAAGGCTGGGTTGTACTTGCGAGCCCTCCAG
tgctaat putative branch site (score: 2)
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcggatgaaatcagcttgattcgttcccgaatgttgctgatgccattcttgctaatggtatgttcagTCATTATGATCGCCCTCGTATTGCTCAGCTGTGTGAAAAGGCTGGGTTGTACTTGCGAGCCCTCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - -gcggatg
- - - - - - - - - - - - - - - - - - - - - - cagcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcttgc