1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tgtatttgtgtgaactatattcccgtcacagtatttatgtttatattataggttatatgagctttgtatgattctaatgaccagttaccatttaccctagGTCATTGGCACCGAATTTTAACAAGCGGTTCAAGCCAGATTTTCCAAGGACCGTGCAAAGAGTTCCTTATGGAACATATTCTAGAATCGAAGGCCATGCT
species | Zea mays |
transcript | GRMZM2G588223_T02 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTAAGATCCATGCTAGGTCAACTTGGTCATAGACGATCTGGCTCTCCAAG GTCATTGGCGCCGAATTTTAACAAGCGGTTCAAGCCAGATTTTCCAAGGACEST: gi|19821861|gb|BQ047885.1|BQ047885
genomic: TTAAGATCCATGCTAGGTCAACTTGGTCATAGACGATCTGGCTCTCCAAGgtgattattt ... tttaccctagGTCATTGGCACCGAATTTTAACAAGCGGTTCAAGCCAGATTTTCCAAGGAC
EST: CATGCTAGGTCAACTTGGTCATAGACGATCTGGCTCTCCAAG GTCATTGGCACCGAATTTTAACAAGCGGTTCAAGCCAGATTTTCCAAGGAC
genomic: CATGCTAGGTCAACTTGGTCATAGACGATCTGGCTCTCCAAGgtgattattt ... tttaccctagGTCATTGGCACCGAATTTTAACAAGCGGTTCAAGCCAGATTTTCCAAGGAC
ttataggttatatgagctttgtatgattctaatgaccagttaccatttaccctagGTCATTGGCACCGAATTTTAACAAGCGGTTCAAGCCAGATTTTCCAAGGACCGTGCAAAGAGTTCCTTATGGAACATATTCTAGAATCGAAGGCCATGCT
ttctaat putative branch site (score: 2)
tttaccct putative PPT
ttatatga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtatttgtgtgaactatattcccgtcacagtatttatgtttatattataggttatatgagctttgtatgattctaatgaccagttaccatttaccctagGTCATTGGCACCGAATTTTAACAAGCGGTTCAAGCCAGATTTTCCAAGGACCGTGCAAAGAGTTCCTTATGGAACATATTCTAGAATCGAAGGCCATGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
tgtattt
- - - - - - - - - - - - - - - - - ttatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgtatg