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gtacatataactcctttatgtttcttctttttcttgctgtcatatctcatggcaacatttctggttaatggtgaattgctggttgtatttacaattgtgcagCCCTGGAAGCTGCTTCTTCCTTCCACATGGTGCTAGGATATATAACAAACTGATGGACTTCATGCGACAACAGTACAGAGATAGAGGATACCAAGAG
species | Zea mays |
transcript | GRMZM2G553314_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CATAGGATATTAGGGAAAGCACAGGAACTCTTCTTTTTCCATGAACTTAG CCCTGGAAGCTGCTTCTTCCTTCCACATGGTGCCAGGATATATAACAAACTEST: gi|67033102|gb|CO461851.1|CO461851
genomic: CATAGGATATTAGGGAAAGCACAGGAACTCTTCTTTTTCCATGAACTTAGgtacatataa ... aattgtgcagCCCTGGAAGCTGCTTCTTCCTTCCACATGGTGCTAGGATATATAACAAACT
EST: TTACCGATATTAGGGAAAGCACAGGAACTCTTCTTTTTCCATGAACTTAG CCCTGGAAGCTGCTTCTTCCTTCCACATGGTGCCAGGATATATAACAAACTEST: gi|87153201|gb|DY397990.1|DY397990
genomic: ATA-GGATATTAGGGAAAGCACAGGAACTCTTCTTTTTCCATGAACTTAGgtacatataa ... aattgtgcagCCCTGGAAGCTGCTTCTTCCTTCCACATGGTGCTAGGATATATAACAAACT
EST: CATAGGATATTAGGGAAAGCACAGGAACTCTTCTTTTTCCATGAACTTAG CCCTGGAAGCTGCTTCTTCCTTCCACATGGTGCCAGGATATATAACAAACTEST: gi|20507213|gb|BQ279533.1|BQ279533
genomic: CATAGGATATTAGGGAAAGCACAGGAACTCTTCTTTTTCCATGAACTTAGgtacatataa ... aattgtgcagCCCTGGAAGCTGCTTCTTCCTTCCACATGGTGCTAGGATATATAACAAACT
EST: CATAGGATATTAGGGAAAGCACAGGAACTCTTCTTTTTCCATGAACTTAG CCCTGGAAGCTGCTTCTTCCTTCCACATGGTEST: gi|26559163|gb|CA831398.1|CA831398
genomic: CATAGGATATTAGGGAAAGCACAGGAACTCTTCTTTTTCCATGAACTTAGgtacatataa ... aattgtgcagCCCTGGAAGCTGCTTCTTCCTTCCACATGGT
EST: CATAGGATATTAGGGAAAGCACAGGAACTCTTCTTTTTCCATGAACTTAG CCCTGGAAGCTGCTTCTTCCTTCCACATGGTGCCAGGATATATAACAAACTEST: gi|87157710|gb|DY402499.1|DY402499
genomic: CATAGGATATTAGGGAAAGCACAGGAACTCTTCTTTTTCCATGAACTTAGgtacatataa ... aattgtgcagCCCTGGAAGCTGCTTCTTCCTTCCACATGGTGCTAGGATATATAACAAACT
EST: CATAGGATATTAGGGAAAGCACAGGAACTCTTCTTTTTCCATGAACTTAG CCCTGGAAGCTGCTTCTTCCTTCCACATGGTGCCAGGATATATAACAAACTEST: gi|22542059|gb|BU092497.1|BU092497
genomic: CATAGGATATTAGGGAAAGCACAGGAACTCTTCTTTTTCCATGAACTTAGgtacatataa ... aattgtgcagCCCTGGAAGCTGCTTCTTCCTTCCACATGGTGCTAGGATATATAACAAACT
EST: CATAGGATATTAGGGAAAGCACAGGAACTCTTCTTTTTCCATGAACTTAG CCCTGGAAGCTGCTTCTTCCTTCCACATGGTGCCAGGATATATAACAAACTEST: gi|32933378|gb|CF038190.1|CF038190
genomic: CATAGGATATTAGGGAAAGCACAGGAACTCTTCTTTTTCCATGAACTTAGgtacatataa ... aattgtgcagCCCTGGAAGCTGCTTCTTCCTTCCACATGGTGCTAGGATATATAACAAACT
EST: CATAGGATATTAGGGAAAGCACAGGAACTCTTCTTTTTCCATGAACTTAG CCCTGGAAGCTGCTTCTTCCTTCCACATGGTGCCAGGATATATAACAAACTEST: gi|50334514|gb|CO529640.1|CO529640
genomic: CATAGGATATTAGGGAAAGCACAGGAACTCTTCTTTTTCCATGAACTTAGgtacatataa ... aattgtgcagCCCTGGAAGCTGCTTCTTCCTTCCACATGGTGCTAGGATATATAACAAACT
EST: CATAGGATATTAGGGAAAGCACAGGAACTCTTCTTTTTCCATGAACTTAG CCCTGGAAGCTGCTTCTTCCTTCCACATGGTGCTAGGATATATAACAAACTEST: gi|19058529|gb|BM737196.1|BM737196
genomic: CATAGGATATTAGGGAAAGCACAGGAACTCTTCTTTTTCCATGAACTTAGgtacatataa ... aattgtgcagCCCTGGAAGCTGCTTCTTCCTTCCACATGGTGCTAGGATATATAACAAACT
EST: CATAGGATATTAGGGAAAGCACAGGAACTCTTCTTTTTCCATGAACTTAG CCCTGGAAGCTGCTTCTTCCTTCCACATGGNGCCAGGATATATAACAAACTEST: gi|211165966|gb|FL031946.1|FL031946
genomic: CATAGGATATTAGGGAAAGCACAGGAACTCTTCTTTTTCCATGAACTTAGgtacatataa ... aattgtgcagCCCTGGAAGCTGCTTCTTCCTTCCACATGGTGCTAGGATATATAACAAACT
EST: CATAGGATATTAGGGAAAGCACAGGAACTCTTCTTTTTCCATGAACTTAG CCCTGGAAGCTGCTTCTTCCTTCCACATGGTGCCAGGATATATAACAAACTEST: gi|22490568|gb|BU050491.1|BU050491
genomic: CATAGGATATTAGGGAAAGCACAGGAACTCTTCTTTTTCCATGAACTTAGgtacatataa ... aattgtgcagCCCTGGAAGCTGCTTCTTCCTTCCACATGGTGCTAGGATATATAACAAACT
EST: CATAGGATATTAGGGAAAGCACAGGAACTCTTCTTTTTCCATGAACTTAG CCCTGGAAGCTGCTTCTTCCTTCCACATGGTGCCAGGATATATAACAAACTEST: gi|9952045|gb|BE638628.1|BE638628
genomic: CATAGGATATTAGGGAAAGCACAGGAACTCTTCTTTTTCCATGAACTTAGgtacatataa ... aattgtgcagCCCTGGAAGCTGCTTCTTCCTTCCACATGGTGCTAGGATATATAACAAACT
EST: CATAGGATATTAGGGAAAGCACAGGAACTCTTCTTTTTCCATGAACTTAG CCCTGGAAGCTGCTTCTTCCTTCCACATGGTGCCAGGATATATAACAAACT
genomic: CATAGGATATTAGGGAAAGCACAGGAACTCTTCTTTTTCCATGAACTTAGgtacatataa ... aattgtgcagCCCTGGAAGCTGCTTCTTCCTTCCACATGGTGCTAGGATATATAACAAACT
catggcaacatttctggttaatggtgaattgctggttgtatttacaattgtgcagCCCTGGAAGCTGCTTCTTCCTTCCACATGGTGCTAGGATATATAACAAACTGATGGACTTCATGCGACAACAGTACAGAGATAGAGGATACCAAGAG
ggttaat putative branch site (score: 124)
ttgtatttacaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacatataactcctttatgtttcttctttttcttgctgtcatatctcatggcaacatttctggttaatggtgaattgctggttgtatttacaattgtgcagCCCTGGAAGCTGCTTCTTCCTTCCACATGGTGCTAGGATATATAACAAACTGATGGACTTCATGCGACAACAGTACAGAGATAGAGGATACCAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT