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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaattcatattataatgaaagtaccctttgaagttcttttagtttgattggtcatgctattttcagGTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCC

Basic information

species Zea mays
transcript GRMZM2G540538_T01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G540538_T01 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os02g41590.1 (Oryza sativa), 3'ss of exon 8
gtaaattcatattataatgaaagtaccctttgaagttctttt---agtttgattggtcatgctattttcagGTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCC
|||||||| ||| |  |  | ||| |||||||||||  ||||   ||||||| |   | || | |||||||||||||||||||||||||||||| ||||| || |||||||| |||||||||||||| |||||||| || ||
gtaaattc-tatcacta-aagagttccctttgaagtggtttttagagtttgactaaccgtgttgttttcagGTGTTCCTGATGAACCTCTCTGCACCCTTTATCTGTGAGTTTTTCCGTGATGCCCAGGAGAAGGTTCTTCC

upper sequence: GRMZM2G540538_T01 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA10G06580.1 (Glycine max), 3'ss of exon 8
-------gtaaattcatattataatgaaagtaccctttgaagttcttttagtttgattggtca--tgctattttcagGTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCC
        | | || |  ||   ||    ||     | | |||| ||| || || | |  ||   | || | | ||| | ||| |||||||||| ||||||||||| || |||||||||||    | ||| |  || || || || ||
gttagatatgatttgaacttggcattcctgttttactggcagtt-tttgagattaagtattctatttctgtatgcagATCTTCATGATGAACCTTTCTGCTCCCTTTATATGTGAGTTCTTTAAGGGTGCACTGGACAAAGTTCTGCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211299293|gb|FK964182.1|FK964182
EST:     CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAG                         GTGTTCCTGATGAACCTCTCTGCTCCTTTCA
genomic: CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAGgtaaattcat ... ctattttcagGTGTTCCTGATGAACCTCTCTGCTCCCTTCA
EST: gi|213175717|gb|FM182537.1|FM182537
EST:     CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAG                         GTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
genomic: CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAGgtaaattcat ... ctattttcagGTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
EST: gi|1498091|gb|AA030701.1|AA030701
EST:     CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAG                         GTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
genomic: CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAGgtaaattcat ... ctattttcagGTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
EST: gi|28361646|gb|CB240002.1|CB240002
EST:     CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAG                         GTGTTCCTGATGAACCTCTCTGCTCCCTTCATT
genomic: CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAGgtaaattcat ... ctattttcagGTGTTCCTGATGAACCTCTCTGCTCCCTTCATT
EST: gi|60340909|gb|DN207882.1|DN207882
EST:     CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAG                         GTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
genomic: CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAGgtaaattcat ... ctattttcagGTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
EST: gi|18649011|gb|BM497830.1|BM497830
EST:     CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAG                         GNGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGGGAGTTCTTCCGTGAT
genomic: CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAGgtaaattcat ... ctattttcagGTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
EST: gi|211153135|gb|FL380305.1|FL380305
EST:     CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAG                         GTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
genomic: CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAGgtaaattcat ... ctattttcagGTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
EST: gi|111433446|gb|EE297763.1|EE297763
EST:     CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAG                         GTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
genomic: CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAGgtaaattcat ... ctattttcagGTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
EST: gi|60358287|gb|DN225260.1|DN225260
EST:     CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAG                         GTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
genomic: CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAGgtaaattcat ... ctattttcagGTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
EST: gi|60349992|gb|DN216965.1|DN216965
EST:     GCATGCTGCAGCAAATAACAAG                         GTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
genomic: GCATGCTGCAGCAAATAACAAGgtaaattcat ... ctattttcagGTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
EST: gi|211425413|gb|FL239286.1|FL239286
EST:     CGCCTGATTCTATCCAGCTAGTTGCTGAGCATGCTGCAGCAAATAACAAG                         GTGTTCCTGATGAACCTCTCTGCTCCCTTCATCTGTGAGTTCTTCCGTGAT
genomic: CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAGgtaaattcat ... ctattttcagGTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
EST: gi|60359018|gb|DN225991.1|DN225991
EST:     CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAG                         GTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
genomic: CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAGgtaaattcat ... ctattttcagGTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
EST: gi|211019335|gb|FL371822.1|FL371822
EST:     CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAG                         GTGTTCCTGATGAACCTCTCTGCTCCCTTCATCTGTGAGTTCTTCCGTGAT
genomic: CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAGgtaaattcat ... ctattttcagGTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
EST: gi|37396080|gb|CF635327.1|CF635327
EST:     CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAG                         GTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
genomic: CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAGgtaaattcat ... ctattttcagGTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
EST: gi|71768280|gb|DR966217.1|DR966217
EST:     CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAG                         GTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
genomic: CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAGgtaaattcat ... ctattttcagGTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
EST: gi|67022254|gb|CO451003.1|CO451003
EST:     CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAG                         GTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
genomic: CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAGgtaaattcat ... ctattttcagGTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
EST: gi|37397822|gb|CF636219.1|CF636219
EST:     CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAG                         GTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
genomic: CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAGgtaaattcat ... ctattttcagGTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
EST: gi|67018775|gb|CO447524.1|CO447524
EST:     CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAG                         GTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
genomic: CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAGgtaaattcat ... ctattttcagGTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
EST: gi|60354205|gb|DN221178.1|DN221178
EST:     AGCAAATAACAAG                         GTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
genomic: AGCAAATAACAAGgtaaattcat ... ctattttcagGTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
EST: gi|67020661|gb|CO449410.1|CO449410
EST:     CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAG                         GTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
genomic: CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAGgtaaattcat ... ctattttcagGTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
EST: gi|44900639|gb|CK827184.1|CK827184
EST:     CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAG                         GTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
genomic: CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAGgtaaattcat ... ctattttcagGTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
EST: gi|18654716|gb|BM499521.1|BM499521
EST:     CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAG                         GTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
genomic: CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAGgtaaattcat ... ctattttcagGTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
EST: gi|9953131|gb|BE639714.1|BE639714
EST:     CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAG                         GTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTTAGTTCTTCCGTGAT
genomic: CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAGgtaaattcat ... ctattttcagGTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
EST: gi|33096147|gb|CF056141.1|CF056141
EST:     CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAG                         GTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
genomic: CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAGgtaaattcat ... ctattttcagGTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
EST: gi|71768279|gb|DR966216.1|DR966216
EST:     TGCTGCAGCAAATAACAAG                         GTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
genomic: TGCTGCAGCAAATAACAAGgtaaattcat ... ctattttcagGTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
EST: gi|67012632|gb|CO441381.1|CO441381
EST:     CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAG                         GTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
genomic: CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAGgtaaattcat ... ctattttcagGTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
EST: gi|37400560|gb|CF637635.1|CF637635
EST:     CGCNTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAG                         GTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
genomic: CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAGgtaaattcat ... ctattttcagGTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
EST: gi|60339525|gb|DN206498.1|DN206498
EST:     GCAAATAACAAG                         GTGTTCCTGATGAACCTCTCTGCTCCCTTCATCTGTGAGTTCTTCCGTGAT
genomic: GCAAATAACAAGgtaaattcat ... ctattttcagGTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
EST: gi|67028257|gb|CO457006.1|CO457006
EST:     CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAG                         GTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
genomic: CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAGgtaaattcat ... ctattttcagGTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
EST: gi|211425412|gb|FL239285.1|FL239285
EST:     CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAG                         GTGTTCCTGATGAACCTCTCTGCTCCCTTCATCTGTGAGTTCTTCCGTGAT
genomic: CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAGgtaaattcat ... ctattttcagGTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
EST: gi|13150078|gb|BG320400.1|BG320400
EST:     CGCCTGATTCTATCCAGCTAGTTGCTGAGCATGCTGCAGCAAATAACAAG                         GTGTTCCTGATGAACCTCTCTGCTCCCTTCATCTGTGAGTTCTTCCGTGAT
genomic: CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAGgtaaattcat ... ctattttcagGTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
EST: gi|32919378|gb|CF024190.1|CF024190
EST:     CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAG                         GTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
genomic: CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAGgtaaattcat ... ctattttcagGTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
EST: gi|211505041|gb|FL430356.1|FL430356
EST:     CGCCTGATTCTATCCAGCTAGTTGCTGAGCATGCTGCAGCAAATAACAAG                         GTGTTCCTGATGAACCTCTCTGCTCCCTTCATCTGTGAGTTCTTCCGTGAT
genomic: CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAGgtaaattcat ... ctattttcagGTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
EST: gi|15313682|gb|BI478903.1|BI478903
EST:     CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAG                         GTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
genomic: CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAGgtaaattcat ... ctattttcagGTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
EST: gi|40303855|gb|CK348242.1|CK348242
EST:     CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAG                         GTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
genomic: CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAGgtaaattcat ... ctattttcagGTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
EST: gi|18654570|gb|BM499375.1|BM499375
EST:     CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAG                         GTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
genomic: CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAGgtaaattcat ... ctattttcagGTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
EST: gi|78543928|gb|DV621426.1|DV621426
EST:     GAGCATGCTGCAGCAAATAACAAG                         GTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
genomic: GAGCATGCTGCAGCAAATAACAAGgtaaattcat ... ctattttcagGTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
EST: gi|28361834|gb|CB240190.1|CB240190
EST:     CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAG                         GTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGT
genomic: CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAGgtaaattcat ... ctattttcagGTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGT
EST: gi|16137390|gb|BI894255.1|BI894255
EST:     CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAG                         GTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
genomic: CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAGgtaaattcat ... ctattttcagGTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
EST: gi|40335337|gb|CK369407.1|CK369407
EST:     CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAG                         GTGTTCCCTGATGA-CCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGA
genomic: CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAGgtaaattcat ... ctattttcagGTGTTCC-TGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGA
EST: gi|32868038|gb|CF007720.1|CF007720
EST:     GTCGCTGAGCATGCTGCAGCAAATAACAAG                         GTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
genomic: GTCGCTGAGCATGCTGCAGCAAATAACAAGgtaaattcat ... ctattttcagGTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
EST: gi|5901147|gb|AW042247.1|AW042247
EST:     CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAG                         GTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
genomic: CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAGgtaaattcat ... ctattttcagGTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
EST: gi|67024289|gb|CO453038.1|CO453038
EST:     CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAG                         GTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
genomic: CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAGgtaaattcat ... ctattttcagGTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
EST: gi|60355538|gb|DN222511.1|DN222511
EST:     CGCCTGATTCTATCCAGCTAGTTGCTGAGCATGCTGCAGCAAATAACAAG                         GTGTTCCTGATGAACCTCTCTGCTCCCTTCATCTGTGAGTTCTTCCGTGAT
genomic: CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAGgtaaattcat ... ctattttcagGTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
EST: gi|60359004|gb|DN225977.1|DN225977
EST:     CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAG                         GTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
genomic: CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAGgtaaattcat ... ctattttcagGTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
EST: gi|32868039|gb|CF007721.1|CF007721
EST:     GTCGCTGAGCATGCTGCAGCAAATAACAAG                         GTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
genomic: GTCGCTGAGCATGCTGCAGCAAATAACAAGgtaaattcat ... ctattttcagGTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
EST: gi|60349736|gb|DN216709.1|DN216709
EST:     AGTCGCTGAGCATGCTGCAGCAAATAACAAG                         GTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
genomic: AGTCGCTGAGCATGCTGCAGCAAATAACAAGgtaaattcat ... ctattttcagGTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
EST: gi|67028036|gb|CO456785.1|CO456785
EST:     CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAG                         GTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
genomic: CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAGgtaaattcat ... ctattttcagGTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
EST: gi|67024355|gb|CO453104.1|CO453104
EST:     CGCCTGATTCTATCCACCTAGTCGCTGAGCATGCTGCAGCAAATAACAAG                         GTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
genomic: CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAGgtaaattcat ... ctattttcagGTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
EST: gi|67022396|gb|CO451145.1|CO451145
EST:     CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAG                         GTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
genomic: CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAGgtaaattcat ... ctattttcagGTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
EST: gi|67039373|gb|CO465628.1|CO465628
EST:     CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAG                         GTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
genomic: CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAGgtaaattcat ... ctattttcagGTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
EST: gi|37400718|gb|CF637717.1|CF637717
EST:     CGCNTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAG                         GTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
genomic: CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAGgtaaattcat ... ctattttcagGTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
EST: gi|15177615|gb|BI398554.1|BI398554
EST:     CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAG                         GTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
genomic: CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAGgtaaattcat ... ctattttcagGTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGAT
EST: gi|9953243|gb|BE639826.1|BE639826
EST:     CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAG                         GTGTTCCTGATGAACCTCTCTGCTCC
genomic: CGCCTGATTCTATCCAGCTAGTCGCTGAGCATGCTGCAGCAAATAACAAGgtaaattcat ... ctattttcagGTGTTCCTGATGAACCTCTCTGCTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataatgaaagtaccctttgaagttcttttagtttgattggtcatgctattttcagGTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCC
                              gtttgat  putative branch site (score: 5)
                                             ctattttc  putative PPT
                         ttttagttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaaattcatattataatgaaagtaccctttgaagttcttttagtttgattggtcatgctattttcagGTGTTCCTGATGAACCTCTCTGCTCCCTTCATTTGTGAGTTCTTCCGTGATGCCCAAGAGAAGGTCCTCCC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGA