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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttcaaaggtgtaaatttgcccctctctacgaagtttctcttttttcaagactttactgaatttaaaagaccttgcaattttacggtttatgcttatgtagGGTGCCGGTTGGAAAGTTGTTGCTAGTTTTGAGGGAAAGTTTCCAACTAGGATCAAACAACTACCTGTGGAAAAGCATTTTGATATGAAAAATGTCAAAA

Basic information

species Zea mays
transcript GRMZM2G485898_T03
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G485898_T03 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os08g32920.1 (Oryza sativa), 3'ss of exon 8
-ttcaaaggtgtaaatttgcccctc--tctacgaagtttctcttttttcaagactttactgaatttaaaagacct-tgcaattttacggtttatgcttatgtagGGTGCCGGTTGGAAAGTTGTTGCTAGTTTTGAGGGAAAGTTTCCAACTAGGATCAAACAACTACCTGTGGAAAAGCATTTTGATATGAAAAATGTCAAAA
 |  |    | |    |  ||  |     |  |||   | ||  |||| ||||| |     ||||| ||  |  | ||  ||  ||    |  |  || |  ||||||  ||||||||||||||||| || |||||||| ||||| ||||| |||||||||||||| ||| |||| ||||||||||||||||||||||| ||||
gtctagtttttttttgtcaccttttgacttctgaaagctatccatttttaagacatggtataatttcaatcatatatgagatgcta----tcctaattgtacagGGTGGAGGTTGGAAAGTTGTTGCAAGCTTTGAGGGGAAGTTCCCAACCAGGATCAAACAACTCCCTCTGGACAAGCATTTTGATATGAAAAATGTGAAAA

upper sequence: GRMZM2G485898_T03 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA07G40300.1 (Glycine max), 3'ss of exon 8
ttcaaaggtgtaaa-tttgcccctctctacgaagtttctctttttt-caagactttactga-atttaaaagaccttgcaattttacggtttatgcttatgtagGGTGCCGGTTGGAAAGTTGTTGCTAGTTTTGAGGGAAAGTTTCCAACTAGGATCAAACAACTACCTGTGGAAAAGCATTTTGATATGAAAAATGTCAAAA
    ||| |  | | ||||    |   || |    | | |   | | ||  ||   | |   ||||      | |   |||| |    |||||     || |||||   |||||||||||||||||||||||||| || || ||||| |  || ||||| ||||| ||| | || |  || ||||| || || |||||||| |
---gaagttagatactttgattttgggtatgggaatccaccaatgtacagtacaagaatcctattttttctgcatctaaattctttcctttatttccttgcagGGTAATGGTTGGAAAGTTGTTGCTAGTTTTGAAGGGAATTTTCCTAACAGAATCAAGCAACTTCCTATCGACAGACACTTTGACATAAACAATGTCAAGA

upper sequence: GRMZM2G485898_T03 (Zea mays), 3'ss of exon 8
lower sequence: Vv18s0089g00350.t01 (Vitis vinifera), 3'ss of exon 8
ttcaaaggtgtaaatttgcccctctctacgaagtttctcttttttcaagactt--tactgaatttaaaagaccttgcaattttacggtttatgcttatgt---agGGTGCCGGTTGGAAAGTTGTTGCTAGTTTTGAGGGAAAGTTTCCAACTAGGATCAAACAACTACCTGTGGAAAAGCATTTTGATATGAAAAATGTCAAAA
  |||     ||| | |  ||    ||  |   ||    || |  ||| | ||  | ||    |||   |  |||  |||||||    |||   ||| ||   ||||||| |||||||| || ||||| ||||||||||| || ||||| |  |||||||| || || ||| | || | ||||||||| || || ||||||||||
--caatatcataattctttcctatcctgtgc--ttatagttatagcaatatttagtgctatgattattcgttctta-aattttatatgttacatttacgtggcagGGTGCTGGTTGGAAGGTCGTTGCCAGTTTTGAGGGGAATTTTCCTAACAGGATCAAGCAGCTCCCTTTAGACAGGCATTTTGACATCAACAATGTCAAAA

upper sequence: GRMZM2G485898_T03 (Zea mays), 3'ss of exon 8
lower sequence: Vv12s0035g01740.t01 (Vitis vinifera), 3'ss of exon 8
-ttcaaaggtgtaaatttgcccctctctacgaagtttctcttttttcaagactttactgaatttaaaagaccttgcaattttacggtttatgcttatgtagGGTGCCGGTTGGAAAGTTGTTGCTAGTTTTGAGGGAAAGTTTCCAACTAGGATCAAACAACTACCTGTGGAAAAGCATTTTGATATGAAAAATGTCAAAA
 |  |    ||     |  |  |  | | |    ||   | ||     ||| | |  |  | |    |    | ||   | |      | | ||| || |||||  |||||||||||||||||| |||||||| || || || || |  |||||||| || |||||| | || || ||||||||||| || ||||||||||
ttctagcattgactgctatcaaccttgtgcaccattagacattacaacagaatctgttctactgcccattattagctgctgtcataaattttctt-tgcagGGTAGCGGTTGGAAAGTTGTTGCAAGTTTTGAAGGCAATTTCCCCAACAGGATCAAGCAGCTACCTTTAGATAAACATTTTGATATAAACAATGTCAAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caagactttactgaatttaaaagaccttgcaattttacggtttatgcttatgtagGGTGCCGGTTGGAAAGTTGTTGCTAGTTTTGAGGGAAAGTTTCCAACTAGGATCAAACAACTACCTGTGGAAAAGCATTTTGATATGAAAAATGTCAAAA
      tttactgaatttaaaa  TA-rich tract