Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...catggcattgggaatccaagaagaatttctggcttttgtgacattgtttagcactgataattctatgctttctactgaaacacttctatttttgatacagGTATTTGGGCAGGAATGCACACAGTCCGTTACTTTGATGGCAAAACATATGAATGGGTCGGACTGAGCCGCCAACGAAGCATCATGGGTAAG

Basic information

species Zea mays
transcript GRMZM2G477340_T03
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G477340_T03 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os05g48060.1 (Oryza sativa), 3'ss of exon 9
catggcattgggaatccaagaagaatttctggcttttgtgacattgtttagcactgataattctatgc-tttctactgaaacacttctatttttgatacagGTATTTGGGCAGGAATGCACACAGTCCGTTACTTTGATGGCAAAACATATGAATGGGTCGGACTGAGCCGCCAACGAAGCATCATGGGTAAG
  || |||        ||     |      |||| | | |   ||  |  |  | | |   ||||    |||   ||||||  ||  |||| || || ||||||| ||||| || ||||||||||||||||||||||| || ||||||||||| ||||| ||||||||||| || | |||||||||||| |||
tctgccatataagcctcactcttagcagtaggctatggagtgttttatgtgttcagcttcatctaaatattttggctgaaatgctaatattctt-attcagGTATATGGGCGGGGATGCACACAGTCCGTTACTTTGACGGTAAAACATATGAGTGGGTTGGACTGAGCCGACAGCCAAGCATCATGGGCAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttagcactgataattctatgctttctactgaaacacttctatttttgatacagGTATTTGGGCAGGAATGCACACAGTCCGTTACTTTGATGGCAAAACATATGAATGGGTCGGACTGAGCCGCCAACGAAGCATCATGGGTAAG
                                     cttctattttt  CT-rich tract
                                      ttctatttttgata  TA-rich tract