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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtatatcacatgctctcattggcaaataacttactatccctgaacaaaatatgttgagatattctgtgggatgattaaagatgatgaacatactattctcctgaacaaaatatcgttgagacctcttccagGTGGGACATTATTGCTGAAAGACTGGGTTTCATGCTGGTGTTTGGTGATCTAGTTTTCATCCCTTTCACCTTCACTATTCAG

Basic information

species Zea mays
transcript GRMZM2G473533_T06
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G473533_T06 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os09g39220.1 (Oryza sativa), 3'ss of exon 8
gtaagtatatcacatgctctcattg---gcaaataacttactatc-------cctgaacaaaatatgttgagatattc-tgtgg-gatgattaaagatgatgaacatac-----tattctcctgaacaaaatatcgttgag-acctcttccagGTGGGACATTATTGCTGAAAGACTGGGTTTCATGCTGGTGTTTGGTGATCTAGTTTTCATCCCTTTCACCTTCACTATTCAG
||||||||||||  |  ||  ||       | |||  ||| ||||         ||    ||  ||  |  || || | ||||  ||| |  || || |  |  |||||     | || | ||| |||   |||  ||    |    |||||| |||||||||||||| ||||| ||||||||||||||||| |||||||||||||| ||||| || || |||||||| ||||||
gtaagtatatcattttgtcctataatataaagatatgttaatatcaatccagtgtgcctgaatgatcatctgaaatgcatgtgacgatcagcaaggacggagttcatacctcattgtttttctgtacagcttatttttttttattatttccagATGGGACATTATTGCGGAAAGGCTGGGTTTCATGCTGGTCTTTGGTGATCTAGTGTTCATTCCATTTACCTTCACCATTCAG

upper sequence: GRMZM2G473533_T06 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os01g25189.6 (Oryza sativa), 3'ss of exon 11
gtaagtatatcacatgctctc-----------attggcaaataac---ttactatccctgaacaaaatatgttgagatattctgtgggatgattaaagatgatgaacatac-----tattctcctgaacaaaatatcgttgag-acctcttccagGTGGGACATTATTGCTGAAAGACTGGGTTTCATGCTGGTGTTTGGTGATCTAGTTTTCATCCCTTTCACCTTCACTATTCAG
||||||||||||  |  ||             ||  || |||| |     | | | ||||||  |   || || | ||   |     ||| |  || || || |  |||||     | || | ||| |||    ||  ||         |||||| |||||||||||||| ||||| ||||| ||||||||||| |||||||||||||| ||||| || || |||||||| ||||||
gtaagtatatcatttagtcctctaatataaagatatgcgaatatcagtccagtgtgcctgaatgat-catcttaa-atgcacgcgacgatcagcaaggacgaagttcatacctcattgtttttctgtacagttgattttttttcgtaatttccagATGGGACATTATTGCGGAAAGGCTGGGCTTCATGCTGGTTTTTGGTGATCTAGTGTTCATTCCGTTTACCTTCACCATTCAG

upper sequence: GRMZM2G473533_T06 (Zea mays), 3'ss of exon 8
lower sequence: AT3G52940.1 (Arabidopsis thaliana), 3'ss of exon 8
gtaagtatatcacatgctctcattggcaaataacttactatccctgaacaaaatatgttgag-atattctgtgggatgattaaagatgatgaacatactattctcctgaacaaaatatcgttgagacctcttccagGTGGGACATTATTGCTGAAAGACTGGGTTTCATGCTGGTGTTTGGTGATCTAGTTTTCATCCCTTTCACCTTCACTATTCAG
                                             |  ||     |||| || | |  |  | |  | |  ||| |  |||| |||  |    |  |  |   | | |  ||   ||   || |||||||||||| ||||| || ||||| || |||||||| |||||||| |||||  | |  || |||||||| || |  ||||||
-----------------------------------------gtaagttcatggcgtgttaaggaaacacatttgtcttaccaaaaa--atgaccat-ttgcattattacatctactttgatttt-actcttttcagGTGGGACATAATTGCAGAGAGACTAGGCTTCATGCTAGTGTTTGGAGATCTCCTGTGGATTCCTTTCACTTTTAGCATTCAG

upper sequence: GRMZM2G473533_T06 (Zea mays), 3'ss of exon 8
lower sequence: AT3G52940.2 (Arabidopsis thaliana), 3'ss of exon 8
gtaagtatatcacatgctctcattggcaaataacttactatccctgaacaaaatatgttgag-atattctgtgggatgattaaagatgatgaacatactattctcctgaacaaaatatcgttgagacctcttccagGTGGGACATTATTGCTGAAAGACTGGGTTTCATGCTGGTGTTTGGTGATCTAGTTTTCATCCCTTTCACCTTCACTATTCAG----
                                             |  ||     |||| || | |  |  | |  | |  ||| |  |||| |||  |    |  |  |   | | |  ||   ||   || |||||||||||| ||||| || ||||| || |||||||| |||||||| |||||  | |  || |||||||| || |  ||||||    
-----------------------------------------gtaagttcatggcgtgttaaggaaacacatttgtcttaccaaaaa--atgaccat-ttgcattattacatctactttgatttt-actcttttcagGTGGGACATAATTGCAGAGAGACTAGGCTTCATGCTAGTGTTTGGAGATCTCCTGTGGATTCCTTTCACTTTTAGCATTCAGGCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaagatgatgaacatactattctcctgaacaaaatatcgttgagacctcttccagGTGGGACATTATTGCTGAAAGACTGGGTTTCATGCTGGTGTTTGGTGATCTAGTTTTCATCCCTTTCACCTTCACTATTCAG
                                             cctcttcc  CT-rich tract
                           aacaaaatat  TA-rich tract