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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggatatgtggagaagtggtttcagacaacgcaagtctcgtattgatgtttgctgtcagttccgggactgatatatatgcttatgatgtgtattctgagacagATGGATGTGAAATATCAACATCCAAACATACATCTCTACATGATGGACCTGAAGGCACCATTGATCCCTGAGGTTGAGGCTACCGACGATAATGGGAACG

Basic information

species Zea mays
transcript GRMZM2G471805_T02
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G471805_T01 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os02g57330.1 (Oryza sativa), 3'ss of exon 8
gtatggatatgtggagaagtggtttcagacaacgcaagtctcgtattgat-gtttgct-----gtcagttccgggactgatatatatgcttatgatg----tgtattctgagacagATGGATGTGAAATATCAACATCCAAACATACATCTCTACATGATGGACCTGAAGGCACCATTGATCCCTGAGGTTGAGGCTACCGACGATAATGGGAACG
|||   | |  |           ||   | ||| |   || | | |   |  | || |      ||||| |      |  | | ||   | | | ||    || ||||| | |||||||||||||||||| |||||||| |  || ||||| ||||| |||||||  || ||  ||||||||||||||||    | || || | | || | | | |
gtacacacacttcagagttcatcttatcagaactcccttcccttgtcatttatctgtttctgcatcagtgcaaaaggtattctctaccatcacgctgttcttgaattctaacacagATGGATGTGAAATACCAACATCCTAGTATTCATCTTTACATAATGGACCCCAAAGCGACATTGATCCCTGAGGTCAGCGATAACGGCAACAACGAGGAGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211175782|gb|FL245447.1|FL245447
EST:     TGGAAATGTGGAAAAGCAATTTCATTGTGAAAACCGTCTCTAAATCGAAG                         ATGGATGTGAAATATCAACATCCAAACATACATCTCTACATGATGGACCTG
genomic: TGGAAATGTGGAAAAGCAATTTCATTGTGAAAACCGTCTCTAAATCGAAGgtatggatat ... tctgagacagATGGATGTGAAATATCAACATCCAAACATACATCTCTACATGATGGACCTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgctgtcagttccgggactgatatatatgcttatgatgtgtattctgagacagATGGATGTGAAATATCAACATCCAAACATACATCTCTACATGATGGACCTGAAGGCACCATTGATCCCTGAGGTTGAGGCTACCGACGATAATGGGAACG
                 gactgat  putative branch site (score: 3)
                      atatatatgcttat  TA-rich tract