Sequence
atgc intronic sequence ATGC exonic sequencegtacgaccctgaatattcactaaaataacactgttcgtatcttcaatggaagagttgcaaatctggagaagctccaattcaacttcttgttttttcctttgcagCCTGTTTTCTTCAGTCTGTACGCCATCATAAGCCACATCAAGCCTGATCAGATTATGTGGTACCGTGCTTGCATGACCTGCAACAAGAAGGTGACTGAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G468475_T01 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os03g11540.1 (Oryza sativa), 3'ss of exon 9
gtacgaccctg-aatattc--actaaaataacactgttcgt-atcttcaatgga--agagttgcaaatctggagaagctccaattcaacttcttgttttttcctttgcagCCTGTTTTCTTCAGTCTGTACGCCATCATAAGCCACATCAAGCCTGATCAGATTATGTGGTACCGTGCTTGCATGACCTGCAACAAGAAGGTGACTGAAG
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gtaaaatcttggaatctttgaaagaaaatggaattgttcttgatgtttagtttattagcactttctagttgtgattgtcctaaatttacttgttatgtttt-----gcagCCTGTGTTCTTCAGTCTGAATGCCTATATTAGCCTTATCAAGCCTGACCAAACCATGTGGTACCGAGCTTGCAAGACCTGCAACAAGAAGGTGACTGAGG
upper sequence: GRMZM2G468475_T01 (Zea mays), 3'ss of exon 8
lower sequence: AT5G08020.1 (Arabidopsis thaliana), 3'ss of exon 7
gtacgaccctgaatattcactaaaataacactgttcgtatcttcaatggaagagttgcaaatctggagaagctccaattcaacttcttgttttttcctttgcagCCTGTTTTCTTCAGTCTGTACGCCATCATAAGCCACATCAAGCCTGATCAGATTATGTGGTACCGTGCTTGCATGACCTGCAACAAGAAGGTGACTGAAG
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----------------gtacttcaa-aacacttttaacatatt------aagatatggaaa---aaagaaaagttgatttatgagtctcgtatatatattgcagCCTGTATTCTTCAGCACTAGAGCTTACATAAGCTTCATCAAGCCAGACCAAACAATGTGGTACCGTGCTTGCAAGACCTGTAACAAGAAAGTTACTGAAG
upper sequence: GRMZM2G468475_T01 (Zea mays), 3'ss of exon 8
lower sequence: Vv11s0065g00990.t01 (Vitis vinifera), 3'ss of exon 1
gta-cgaccctgaatattc-actaaaataacactgttcgtatcttcaatggaagagttgcaaatctggagaagctccaattcaact--tcttgttttttcctt-tgcagCCTGTTTTCTTCAGTCTGTACGCCATCATAAGCCACATCAAGCCTGATCAGATTATGTGGTACCGTGCTTGCATGACCTGCAACAAGAAGGTGACTGAAG
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gtaataattactgtcattagaataacctaacatgatcaacctggtcttagccaaagttttgagttaaaagcatattcagttttgataatgtgggcttgtctttgtacagCCTTCCTTTTTTAGCATCAGAGCATACATAAGCTTCATCAAGCCTGATCAAACAATGTGGTACCGGGCTTGTAAGACATGCAACAAGAAAGTCACAGATG
upper sequence: GRMZM2G468475_T01 (Zea mays), 3'ss of exon 8
lower sequence: Vv00s0587g00010.t01 (Vitis vinifera), 3'ss of exon 4
gta-cgaccctgaatattcac-taaaataacactgttcgtatcttcaatggaagagttgcaaatctggagaagctccaattcaact--tcttgttttttcctt-tgcagCCTGTTTTCTTCAGTCTGTACGCCATCATAAGCCACATCAAGCCTGATCAGATTATGTGGTACCGTGCTTGCATGACCTGCAACAAGAAGGTGACTGAAG
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gtaataattactgtcattaaaataacctaacatgatcaacctggtcttagccaaagttttgagttaaaagcatattcagttttgataatgtgggcttgtctttgtacagCCTTCCTTTTTTAGCATCAGAGCATACATAAGCTTCATCAAGCCTGATCAAACAATGTGGTACCGGGCTTGTAAGACATGCAACAAGAAAGTCACAGGTG
upper sequence: GRMZM2G468475_T01 (Zea mays), 3'ss of exon 8
lower sequence: Vv17s0000g07440.t01 (Vitis vinifera), 3'ss of exon 9
gta-cgaccctgaatattcac-taaaataacactgttcgtatcttcaatggaagagttgcaaatctggagaagctccaattcaacttctt---gttttttcctttgcagCCTGTTTTCTTCAGTCTGTACGCCATCATAAGCCACATCAAGCCTGATCAGATTATGTGGTACCGTGCTTGCATGACCTGCAACAAGAAGGTGACTGAAG
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gtaataattactgtcattaaaataacttaacatgaccaaactggtcttagccaaagttttgagttaaaaccatattcagttttgataatgtgggcttgtctctgtacagCCTTCCTTTTTTAGCATCAGGGCATACATAAGCTTCATCAAGCCTGATCAAACAATGTGGTACCGGGCTTGTAAGACATGCAACAAGAAAGTCACAGATG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aagagttgcaaatctggagaagctccaattcaacttcttgttttttcctttgcagCCTGTTTTCTTCAGTCTGTACGCCATCATAAGCCACATCAAGCCTGATCAGATTATGTGGTACCGTGCTTGCATGACCTGCAACAAGAAGGTGACTGAAG
ttcaacttcttgtttt CT-rich tract
ttgtttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtacgaccctgaatattcactaaaataacactgttcgtatcttcaatggaagagttgcaaatctggagaagctccaattcaacttcttgttttttcctttgcagCCTGTTTTCTTCAGTCTGTACGCCATCATAAGCCACATCAAGCCTGATCAGATTATGTGGTACCGTGCTTGCATGACCTGCAACAAGAAGGTGACTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG