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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgattatgtatggattactaaagctattatactcttaacatttgaattgggttgtgatgacatttttttctctactttcagTTCCTGCTAACACTTCTTGGCCAGAATTTGAGATAAAAATAGACTATGAAGGTATATTTGATTCCAATAGTGGTGATGAGAATAACTCGAAGTTGTTGGT

Basic information

species Zea mays
transcript GRMZM2G457909_T01
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|166442859|gb|EG299639.1|EG299639
EST:     ATAAGTTCTTCCGCTGCTTCTAAATTCAG-TTTGCCAACTATTGGAAAAG                         TTCCTGCTAACACTTCTTGGCCAGAATTTGAGATAAAA
genomic: ATAAGTTCTTCCGCTGCTTC-AAATTCAGTTTTGCCAACTATTGGAAAAGgtgattatgt ... ctactttcagTTCCTGCTAACACTTCTTGGCCAGAATTTGAGATAAAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatactcttaacatttgaattgggttgtgatgacatttttttctctactttcagTTCCTGCTAACACTTCTTGGCCAGAATTTGAGATAAAAATAGACTATGAAGGTATATTTGATTCCAATAGTGGTGATGAGAATAACTCGAAGTTGTTGGT
      tcttaac  putative branch site (score: 2)
                                  catttttttctctact  putative PPT
        ttaacatttgaatt  TA-rich tract