Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtctacatccatatgttgatactttatgtcatttctttgatttcttagcatagcttatggtagtattttgaatgtccttttggtgacatgccctgatttctgcttgtaaactgttatgcagGCCATTCATTAAATCATTCATCCAAGGGTTTCTTCCTGGAATTGCTTTGAAGATCTTCCTTATAGTGCTTCCAACTATACTGATGTTTATGTCTAAATTT

Basic information

species Zea mays
transcript GRMZM2G456000_T01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G456000_T01 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os05g51630.2 (Oryza sativa), 3'ss of exon 7
gtaagtctacatccatatgttgatactttatgt--------catttctttgatttctta---gcatagcttatggtagtattttgaa---------------tgtccttttggtgacatgccctgatttctgcttgtaaactgttatgcagGCCATTCATTAAATCATTCATCCAAGGGTTTCTTCCTGGAATTGCTTTGAAGATCTTCCTTATAGTGCTTCCAACTATACTGATGTTTATGTCTAAATTT
|||||| |   | ||| |||||||  |||||          ||||||  |||||| ||    |  ||  | ||    |||  ||  |               ||   || |  ||| ||||||||||   | |||||  ||| || |||||     |||| ||||||||||||||||| |||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||
gtaagtgtttcttcatgtgttgattatttatactattattgcatttccatgatttattcagcgtgtaattaatttgggtacattagacatatggttatcttctgctattcttttgaaatgccctgataaat-cttgttgactattgtgcagTGATGTCATCAAATCATTCATCCAAGGTTTTCTTCCAGGAATTGCTTTGAAGGTCTTCCTTATATTGCTTCCAACTATACTGATGTTTATGTCTAAGTTT

upper sequence: GRMZM2G456000_T01 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA02G43910.2 (Glycine max), 3'ss of exon 8
gtaagtctacatccatatgttgatactttatgtcatttctttgatttcttagcatagcttatggtagtattttgaatgtccttttggtgacatgccctgatttctgcttgtaaactgttatgcagGCCATTCATTAAATCATTCATCCAAGGGTTTCTTCCTGGAATTGCTTTGAAGATCTTCCTTATAGTGCTTCCAACTATACTGATGTTTATGTCTAAATTT
                    ||||    |     || |    |||  |   |  ||||||    |  ||   | || ||   | ||||   |   |     || ||||| |    | ||   ||||| |||||| ||||| || || ||||| || |||||||| |||||||||||||| || || ||| | || ||| | ||| ||||| | ||||| || || 
-----------------gagtgatgaaatgcaaaatgttacagataaccctgtgtagctt----tgataccgtaaaggtgtatgtggtagaa--actaatcttatgcttctcttttattc--cagGCAATTCATAAAATCCTTTATACAAGGTTTCCTTCCTGGGATTGCTTTGAAGATATTTCTCATATTTCTGCCAGCAATATTGATGATAATGTCCAAGTTC

upper sequence: GRMZM2G456000_T01 (Zea mays), 3'ss of exon 8
lower sequence: Vv10s0116g00940.t01 (Vitis vinifera), 3'ss of exon 7
-----------------gtaagtctacatccatatgttgatactttatgtcatttctttgatttcttagcat---agcttatggtagta--ttttgaatgtccttttg-gtgacatgccctgatttctgcttgtaaactgttatgcagGCCATTCATTAAATCATTCATCCAAGGGTTTCTTCCTGGAATTGCTTTGAAGATCTTCCTTATAGTGCTTCCAACTATACTGATGTTTATGTCTAAATTT
                  | ||  | | |  | |  | || | ||| |      |   ||| |  | |  ||   | | ||    |  |  | || |   || ||||     |||||   | ||| || | ||  |  |||||| ||||   ||||| || ||| | |||||||| ||||| ||||| |||| | ||||||| ||||| || || || ||||| ||| ||||| | ||||||||||||
gtaagttctttcccactctcagatttcttttacaaatggagaatttgttagccattgatgagtgatcaatattcaaacatacaaaatcagctgttcagcatctttttctactacatgat-taattactccctg--atttgttatccagGAAGTTCATCAAGTCACTAATCCAAGGTTTTCTACCTGGGATTGTTCTGAAGATTTTCCTCATTGTTCTACCAACCATATTGATGCTGATGTCTAAATTT

upper sequence: GRMZM2G456000_T01 (Zea mays), 3'ss of exon 8
lower sequence: Vv12s0059g01090.t01 (Vitis vinifera), 3'ss of exon 7
gtaagtctacatccatatgttgatactttatgtcatttctttgatttcttagcatagcttatggtagtattttgaatgtccttttggtgacatgccctgatttctgcttgtaaactgttatgcagGCCATTCATTAAATCATTCATCCAAGGGTTTCTTCCTGGAATTGCTTTGAAGATCTTCCTTATAGTGCTTCCAACTATACTGATGTTTATGTCTAAATTT
   | | || ||  |||| |  ||| | ||| |   |   |  || | |    |||   |||     ||| |   || |   |||  | ||| ||  ||  ||            ||| |||||| |  ||||| || ||| |||||||||| ||||||||||| |||||| | |||||||| || ||  | || ||| | ||| ||||| | ||||||||||||
---actttaaat--atatataaata-tatatatatatatatatatatatatatata---tatatatatatat---atatatatttattaaca-gcattgtctt------------tgtcatgcagCCACTTCATCAAGTCAATCATCCAAGGTTTTCTTCCTGGGATTGCTCTAAAGATCTTTCTCATTTTTCTACCATCAATATTGATGCTAATGTCTAAATTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgaatgtccttttggtgacatgccctgatttctgcttgtaaactgttatgcagGCCATTCATTAAATCATTCATCCAAGGGTTTCTTCCTGGAATTGCTTTGAAGATCTTCCTTATAGTGCTTCCAACTATACTGATGTTTATGTCTAAATTT
                        ccctgat  putative branch site (score: 4)
                                     ttgtaaa  TA-rich tract