1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...agtttgatacgatgctctagacattagacttgtagattttgttacatcattattgtgaggctttgaaatttgagcgccgtgcttctttaattcctttcagGTGGAACTGATTCCGTAGGGTATGGTGTCGACCAATCAGCAACACATCTATCTCAACTCCAGAGTTCATCCACCAATCTCCAGACGCCATACGATGACAC
species | Zea mays |
transcript | GRMZM2G451882_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GTATCAACAACACCTCTCCTCA-CGAGCATGGCAGGGTCATCACCATCAG GNGGAACTGATTCCGNAGGG-ATGGNGTCAAC-AATCAGCAACACATCTATEST: gi|60398432|gb|DN231248.1|DN231248
genomic: GTATCAACAACACCTCTCCTCAACGAGCATGCCAGGGTCATCACCATCAGgtgagcagca ... ttcctttcagGTGGAACTGATTCCGTAGGGTATGGTGTCGACCAATCAGCAACACATCTAT
EST: GTATCAACAACACCTCTCCTCAACGAGCATGCCAGGGTCATCACCATCAG GTGGAACTGATTCCGTAGGGTATGGTGTCGACCAATCAGCAACACATCTATEST: gi|47961932|gb|CN844641.1|CN844641
genomic: GTATCAACAACACCTCTCCTCAACGAGCATGCCAGGGTCATCACCATCAGgtgagcagca ... ttcctttcagGTGGAACTGATTCCGTAGGGTATGGTGTCGACCAATCAGCAACACATCTAT
EST: GTATCAACAACACCTCTCCTCAACGAGCATGCCAGGGTCATCACCATCAG GTGGAACTGATTCCGTAGGGTATGGTGTCGACCAATCAGCAACACATCTAT
genomic: GTATCAACAACACCTCTCCTCAACGAGCATGCCAGGGTCATCACCATCAGgtgagcagca ... ttcctttcagGTGGAACTGATTCCGTAGGGTATGGTGTCGACCAATCAGCAACACATCTAT
atcattattgtgaggctttgaaatttgagcgccgtgcttctttaattcctttcagGTGGAACTGATTCCGTAGGGTATGGTGTCGACCAATCAGCAACACATCTATCTCAACTCCAGAGTTCATCCACCAATCTCCAGACGCCATACGATGACAC
ctttaat putative branch site (score: 69)
cttctttaattccttt CT-rich tract
tttgaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtttgatacgatgctctagacattagacttgtagattttgttacatcattattgtgaggctttgaaatttgagcgccgtgcttctttaattcctttcagGTGGAACTGATTCCGTAGGGTATGGTGTCGACCAATCAGCAACACATCTATCTCAACTCCAGAGTTCATCCACCAATCTCCAGACGCCATACGATGACAC
- - - - - gatgctc
- - - - - - - - - - - - - - - - - - ttttgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tgaggct