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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtcaccttaactttcgtttctgatcatgttgctcaaaagatgttgacgaaagatgtgttgaagtcactgaaagcactttgcggacacaagaactctgaggcaagacgaactggatttagactctggttgatatgttgtttggataaccaccagagagctcatcattatttgcttccttttgttagGTGCAACGTCTATCTCTGTTTGCAGTTGGCAATTTGGCTTTCTGCTTGGAGACTCGGCGCACCCTCATGCATTCTGAAAGTTTGCGTGACCTTTTAATCC

Basic information

species Zea mays
transcript GRMZM2G451672_T03
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G451672_T03 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os07g33670.1 (Oryza sativa), 3'ss of exon 6
gtagtcaccttaactttcgtttctgatcatgttgctcaaaagatgttgacgaaagatgtgttgaagtcactgaaagcactttgcggacacaagaactctgaggcaagacgaactggatttagactctggttgatatgttgtttggataaccaccagagagctcatcattatttgcttccttttgttagGTGCAACGTCTATCTCTGTTTGCAGTTGGCAATTTGGCTTTCTGCTTGGAGACTCGGCGCACCCTCATGCATTCTGAAAGTTTGCGTGACCTTTTAATCC
                                                                                                      |||||| || |||||||||||||||||||||| |||||||| |||| ||||| | |||||||    ||| || | || |||  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||| |
------------------------------------------------------------------------------------------------------gcaagatgatctggatttagactctggttgatgtgttgtttcgatacccaccggtgagctcacttgtatctgttcccattttctagGTGCAACGTCTATCTCTATTTGCAGTTGGCAATTTGGCTTTCTGCTTGGAGACTCGTCGCACCCTCATGCACTCTGAAAGTTTGCGCGACCTTTTAATTC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgttgtttggataaccaccagagagctcatcattatttgcttccttttgttagGTGCAACGTCTATCTCTGTTTGCAGTTGGCAATTTGGCTTTCTGCTTGGAGACTCGGCGCACCCTCATGCATTCTGAAAGTTTGCGTGACCTTTTAATCC
          ggataac  putative branch site (score: 3)
                                  ttatttgcttcctttt  putative PPT
                              atcattattt  TA-rich tract