Skip to another splice site:
1  
 5'  3'   
2  
 5'  3'   
3  
 5'  3'   
4  
 5'  3'   
5  
 5'  3'   
6  
 5'  3'   
7  
 5'  3'   
8  
 5'  3'   
9  
 5'  3'   
10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaaaaagcaaaaaacgctgatatatgtctatcttcttgctaggattacagctgtaatggtcatcttagtttataattgaagtgaattcaacatgtgtcatgtcaatatgctgtttacatgattaacataaatacttcttgcaccatcttctgttaatattatcctttactatttgtagGGACCATGGAAACAATAACAGCTTGACATCTTGGAAACCGTACGGTGTTCCTCTTCTTGCACAAATTTCTCGCAATGAAATTGTCACGGGTTTTGATATC

Basic information

species Zea mays
transcript GRMZM2G451357_T01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G451357_T01 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os11g28365.1 (Oryza sativa), 3'ss of exon 1
gtaagaaaaagcaaaaaacgctgatatatgtctatcttcttgctaggattacagctgtaa-tggtcatcttagtttata-attgaagtgaattcaacatgtgtcatgtcaatatgctgtttacatgattaacataaa-tacttcttgc-accatcttctgttaatattatc--ctttactatttgtagGGACCATGGAAACAATAACAGCTTGACATCTTGGAAACCGTACGGTGTTCCTCTTCTTGCACAAATTTCTCGCAATGAAATTGTCACGGGTTTTGATATC
||||| ||| | ||||| || | || ||| ||| |||||| || | || |||| | | | ||| || || || | | ||| ||| || | ||| || | | || ||| || | |||| | | || | | || | | ||| |||| || |||||| | |||||||||| ||| | ||| ||||||| || ||||||||||||||||| |||||| | ||||| ||||||| |||||||||| | |||||
gtaagcaaata-ataaaactctagt-tacaattatgttcatgctagtatgatagatgtagcttacttgcatgttttttatatataaacaagcctagcatatgtgatccct-tatactttacatggaatagttggaaaataatacttgtgatcgaatttttcttatgatgttagcttcactacttacagGGACAACGGAAACAATATCAGTGTAACAGCTTGGAAGCCCTACGGTGTTCCTCTTCTGGCACAAGTATCTCGTAATGAAACTGTCACGGGTATGCATATC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacataaatacttcttgcaccatcttctgttaatattatcctttactatttgtagGGACCATGGAAACAATAACAGCTTGACATCTTGGAAACCGTACGGTGTTCCTCTTCTTGCACAAATTTCTCGCAATGAAATTGTCACGGGTTTTGATATC
                                      tcctttact  CT-rich tract
 ttaatattatccttta  TA-rich tract