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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgttcagccatttctctgtgattaattaactagatccctccactttgtaagagatctgttcagttttgcattttacattttgcccccctctgatttgcagGAGCACTGTACTTGATACAGCGTGAAACTCAAGCTACTTTGCTTGCGGCATTATTCAGAGTTCTCATTCTTTTGATATCTGCTACACC

Basic information

species Zea mays
transcript GRMZM2G446895_T02
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211215973|gb|FL105886.1|FL105886
EST:     CACTACATTATCTTCCTCACTTGGTCAAATATTGATGCAACTGCATACAG                         GAGCACTGTACTTGATACAGCGTGAAACTCAAGCTACTTTGCTTGCGGCAT
genomic: CACTACATTATCTTCCTCACTTGGTCAAATATTGATGCAACTGCATACAGgtaggggagt ... tgatttgcagGAGCACTGTACTTGATACAGCGTGAAACTCAAGCTACTTTGCTTGCGGCAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtaagagatctgttcagttttgcattttacattttgcccccctctgatttgcagGAGCACTGTACTTGATACAGCGTGAAACTCAAGCTACTTTGCTTGCGGCATTATTCAGAGTTCTCATTCTTTTGATATCTGCTACACC
                                          ctctgat  putative branch site (score: 4)
                         ttttacattttgcccc  CT-rich tract
                        attttacatttt  TA-rich tract