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gtaatatgtttctccacattttagtgacatttttgtgtaaaaatggaagatgccatttgacatgatcacatgaacaacgaaccccatatgcgtgaattcaccgttacccatgtttcagGTAATTGACAAGTCATTTGGTTTCGACACAGCAGTCGAGGAGGCTCAACGTGCAATAAATGCTGCTCATGTGGAGGCTGTAAGTGCTGAGAATGGTATAG
species | Zea mays |
transcript | GRMZM2G443985_T03 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TCAAAGTTTCTGTTGCTGGCATTCCAAAGACTATTGACAATGACGTCCCT GTAATTGACAAGTCATTTGGTTTCGACACAGCAGTCGAGGAGGCTCAACGTEST: gi|32938968|gb|CF043787.1|CF043787
genomic: TCAAAGTTTCTGTTGCTGGCATTCCAAAGACTATTGACAATGACATCCCTgtaatatgtt ... catgtttcagGTAATTGACAAGTCATTTGGTTTCGACACAGCAGTCGAGGAGGCTCAACGT
EST: TCAAAGTTTCTGTTGCTGGCATTCCAAAGACTATTGACAATGACATCCCT GTAATTGACAAGTCATTTGGTTTCGACACAGCAGTCGAGGAGGCTCAACGTEST: gi|32939806|gb|CF044625.1|CF044625
genomic: TCAAAGTTTCTGTTGCTGGCATTCCAAAGACTATTGACAATGACATCCCTgtaatatgtt ... catgtttcagGTAATTGACAAGTCATTTGGTTTCGACACAGCAGTCGAGGAGGCTCAACGT
EST: TCAAAGTTTCTGTTGCTGGCATTCCAAAGACTATTGACAATGACATCCCT GTAATTGACAAGTCATTTGGTTTCGACACAGCAGTCGAGGAGGCTCAACGTEST: gi|32939493|gb|CF044312.1|CF044312
genomic: TCAAAGTTTCTGTTGCTGGCATTCCAAAGACTATTGACAATGACATCCCTgtaatatgtt ... catgtttcagGTAATTGACAAGTCATTTGGTTTCGACACAGCAGTCGAGGAGGCTCAACGT
EST: TCAAAGTTTCTGTTGCTGGCATTCCAAAGACTATTGACAATGACATCCCT GTAATTGACAAGTCATTTGGTTTCGACACAGCAGTCGAGGAGGCTCAACGTEST: gi|13557855|gb|BG549211.1|BG549211
genomic: TCAAAGTTTCTGTTGCTGGCATTCCAAAGACTATTGACAATGACATCCCTgtaatatgtt ... catgtttcagGTAATTGACAAGTCATTTGGTTTCGACACAGCAGTCGAGGAGGCTCAACGT
EST: TCAAAGTTTCTGTTGCTGGCATTCCAAAGACTATTGACAATGACATCCCT GTAATTGACAAGTCATTTGGTTTCGACACAGCAGTCGAGGAGGCTCAACGTEST: gi|76921243|gb|DV168509.1|DV168509
genomic: TCAAAGTTTCTGTTGCTGGCATTCCAAAGACTATTGACAATGACATCCCTgtaatatgtt ... catgtttcagGTAATTGACAAGTCATTTGGTTTCGACACAGCAGTCGAGGAGGCTCAACGT
EST: TCAAAGTTTCTGTTGCTGGCATTCCAAAGACTATTGACAATGACATCCCT GTAATTGACAAGTCATTTGGTTTCGACACAGCAGTCGAGGAGGCTCAACGTEST: gi|211132969|gb|FL170874.1|FL170874
genomic: TCAAAGTTTCTGTTGCTGGCATTCCAAAGACTATTGACAATGACATCCCTgtaatatgtt ... catgtttcagGTAATTGACAAGTCATTTGGTTTCGACACAGCAGTCGAGGAGGCTCAACGT
EST: TCAAAGTTTCTGTTGCTGGCATTCCAAAGACTATTGACAATGACATCCCT GTAATTGACAAGTCATTTGGTTTCGACACAGCAGTCGAGGAGGCTCAACGT
genomic: TCAAAGTTTCTGTTGCTGGCATTCCAAAGACTATTGACAATGACATCCCTgtaatatgtt ... catgtttcagGTAATTGACAAGTCATTTGGTTTCGACACAGCAGTCGAGGAGGCTCAACGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatatgtttctccacattttagtgacatttttgtgtaaaaatggaagatgccatttgacatgatcacatgaacaacgaaccccatatgcgtgaattcaccgttacccatgtttcagGTAATTGACAAGTCATTTGGTTTCGACACAGCAGTCGAGGAGGCTCAACGTGCAATAAATGCTGCTCATGTGGAGGCTGTAAGTGCTGAGAATGGTATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG