Sequence
atgc intronic sequence ATGC exonic sequencegtatgacatgttcatttgcacatatgagcattttggacattatgactgattggttaacttgaattagGTTTGGGATTATCAAACAAAGAGCTGTGTTCAAACACTTGAAGGACATGCACATAATGTCTCTGCTGTATGTTTCCATCCTGAGCTTCCAATAATAATGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G443953_T01 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA13G43680.2 (Glycine max), 3'ss of exon 7
-----------------------------------gtatgacatgttcatttgcacatatgagcattttggacattatgactgat-tggtt--aactt--gaattagGTTTGGGATTATCAAACAAAGAGCTGTGTTCAAACACTTGAAGGACATGCACATAATGTCTCTGCTGTATGTTTCCATCCTGAGCTTCCAATAATAATGA
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gttttgttttcatttgttgcttgatctatctgcttgtacg-catttacatatacatacatatatatatatatgaaaaggaataacatggatgaaacttatgaatcagGTATGGGATTATCAGACCAAAAGTTGTGTCCAGACCCTAGAAGGTCACACACACAATGTATCTGCTGTATGCTTTCATCCTGAACTTCCTATAATCATTA
upper sequence: GRMZM2G443953_T01 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA15G01680.1 (Glycine max), 3'ss of exon 7
-------------------------------gtatgacatgttcatttgcacatatgagcattttggacattatgac-tgattggttaacttgaattagGTTTGGGATTATCAAACAAAGAGCTGTGTTCAAACACTTGAAGGACATGCACATAATGTCTCTGCTGTATGTTTCCATCCTGAGCTTCCAATAATAATGA
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gttttgttttcatttgttgcttaatctatctgcttgtcgcgcacacgcacacacacacatgtatgaaaaggaataacatggatgaaacttacgaatcagGTATGGGATTATCAGACCAAAAGTTGTGTCCAGACCCTAGAAGGTCACACACACAATGTATCTGCTGTATGCTTTCATCCTGAACTTCCTATAATCATTA
upper sequence: GRMZM2G443953_T01 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA07G03890.1 (Glycine max), 3'ss of exon 7
---------------------------------------gtatgacatgttcatttgcacatatgagcattttgga--cattatgactgattggttaacttgaattagGTTTGGGATTATCAAACAAAGAGCTGTGTTCAAACACTTGAAGGACATGCACATAATGTCTCTGCTGTATGTTTCCATCCTGAGCTTCCAATAATAATGA
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gtttgttttctattttctgttttttcctcttcatcttccctctaatttggtttcctatatttgtatatggataggaattattatg-ccgataaaacc-tttgaatcagGTATGGGATTATCAAACCAAAAGTTGTGTCCAGACTCTAGAAGGTCACACACACAATGTATCTGCTGTATGCTTTCATCCTGAACTACCTATAATCATTA
upper sequence: GRMZM2G443953_T01 (Zea mays), 3'ss of exon 8
lower sequence: AT3G15980.3 (Arabidopsis thaliana), 3'ss of exon 7
--------------------gtatgacatgttcatttgcacatatgagcattttggacattatgactg---attggttaacttgaattagGTTTGGGATTATCAAACAAAGAGCTGTGTTCAAACACTTGAAGGACATGCACATAATGTCTCTGCTGTATGTTTCCATCCTGAGCTTCCAATAATAATGA
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gtatgcttctggttaagcttccaatatctgtgctttgattcccctgagaattatgtatttgcagatcgtttactagtggtactttttcagGTATGGGACTATCAAACCAAAAGTTGTGTCCAGACGCTAGATGGGCACACACACAATGTTTCTGCCGTATGTTTCCATCCAGAGCTTCCAATAATAATCA
upper sequence: GRMZM2G443953_T01 (Zea mays), 3'ss of exon 8
lower sequence: AT1G79990.1 (Arabidopsis thaliana), 3'ss of exon 11
-----------------------------------------------------------------------gtatgacatgttcatttgcacatat-gagcattttggacat-tatgactgattggttaactt--gaattagGTTTGGGATTATCAAACAAAGAGCTGTGTTCAAACACTTGAAGGACATGCACATAATGTCTCTGCTGTATGTTTCCATCCTGAGCTTCCAATAATAATGA
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gtctgtactgagctttcttgcttctttgcaagttgtttgctacatatgtgtgcttgtatgtatctccatttgtattgtttgtatataggttcgtgcagggttttctgtttgtatattgttcataaatttcttctggaagcagGTGTGGGATTACCAAACAAAGAGTTGCGTTCAGACTCTCGAAGGTCATACACACAATGTTTCTGCAGTATCTTTTCATCCAGAGCTACCTATAATTATTA
upper sequence: GRMZM2G443953_T01 (Zea mays), 3'ss of exon 8
lower sequence: AT1G52360.1 (Arabidopsis thaliana), 3'ss of exon 7
--------------------------gtatgacatgttcat-ttgcacat-atgagcattttggacattatgactgattggttaacttgaattagGTTTGGGATTATCAAACAAAGAGCTGTGTTCAAACACTTGAAGGACATGCACATAATGTCTCTGCTGTATGTTTCCATCCTGAGCTTCCAATAATAATGA
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gtatgcctcctgttcaatggtcttttagttgatacatttctactggacattatgtgctttcaggttatt--tactagttgaatttcgtgaatcagGTCTGGGACTACCAAACAAAAAGTTGTGTACAGACCCTGGAGGGGCACACACACAATGTATCTGCAGTATGTTTCCATCCAGAGCTTCCAATTATAATCA
upper sequence: GRMZM2G443953_T01 (Zea mays), 3'ss of exon 8
lower sequence: Vv09s0002g04810.t01 (Vitis vinifera), 3'ss of exon 7
---------------------gtatgacatgttca---tttgcacatatgagcattttggacattatgactgattggttaacttgaattagGTTTGGGATTATCAAACAAAGAGCTGTGTTCAAACACTTGAAGGACATGCACATAATGTCTCTGCTGTATGTTTCCATCCTGAGCTTCCAATAATAATGA
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gtctgccgttgataattattttcaagctgtgtttagtatttatgcggtttgatagaa-ggaaatgttcatggacaaatcctccaaatgcagGTGTGGGACTATCAAACCAAAAGTTGTGTCCAGACACTGGAAGGCCACACACACAATGTTTCTGCAGTCTGCTTCCATCCTGAACTTCCCATAATAATAA
upper sequence: GRMZM2G443953_T01 (Zea mays), 3'ss of exon 8
lower sequence: PP1S61_1V6.1 (Physcomitrella patens), 3'ss of exon 7
--------------------------------------------------------------------------------------------------------------------------gtatgacatgttcatttgcacatatgagcattttggacattatgactgat--tggttaacttg--aattagGTTTGGGATTATCAAACAAAGAGCTGTGTTCAAACACTTGAAGGACATGCACATAATGTCTCTGCTGTATGTTTCCATCCTGAGCTTCCAATAATAATGA
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gtaatgactttatcttgtctgttgctaatcttaattctccaggtcaatataactgaaagacttggttctataaggctttcgggatttgcatgagtatcatttttgacatagcatgacttactgtaatccatgttcgattaaatgtattctgatgtgtagttcagtaacttacaattttttccttgtcgggcagGTTTGGGATTATCAGACCAAGAGCTGCGTTCAAACACTGGAAGGACATACTCACAACGTATCTGCAGTGGCATTCCATCCTGACCTGCCAATTATCCTTA
upper sequence: GRMZM2G443953_T01 (Zea mays), 3'ss of exon 8
lower sequence: PP1S243_63V6.1 (Physcomitrella patens), 3'ss of exon 7
----------------------------gtatgacatgttcatttgcacatatgagcatt--ttggacattatgactgattgg---ttaacttgaattagGTTTGGGATTATCAAACAAAGAGCTGTGTTCAAACACTTGAAGGACATGCACATAATGTCTCTGCTGTATGTTTCCATCCTGAGCTTCCAATAATAATGA
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cgacgtggtaaacgtcatgtttaagtgaagatcacttggtcattcaagttgttgcatattgattgcttagtttcccttcctggcgttctctttgatgcagGTGTGGGATTACCAAACCAAGAGCTGTGTGCAGACTTTAGAGGGTCATTCTCATAATGTGTCTGCAGTGTGTTTCCATCCTGAGCTCCCCATCATTTTAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71449170|gb|DR830220.1|DR830220EST: GTGGTGACCGGCCATATCTAATTACAGGCTCTGATGACCAAACTGCAAAG GTTTGGGATTATCAAACAAAGAGCTGTGTTCAAACACTTGAAGGACATGCA
genomic: GTGGTGACCGGCCATATCTAATTACAGGCTCTGATGACCAAACTGCAAAGgtatgacatg ... cttgaattagGTTTGGGATTATCAAACAAAGAGCTGTGTTCAAACACTTGAAGGACATGCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.catttgcacatatgagcattttggacattatgactgattggttaacttgaattagGTTTGGGATTATCAAACAAAGAGCTGTGTTCAAACACTTGAAGGACATGCACATAATGTCTCTGCTGTATGTTTCCATCCTGAGCTTCCAATAATAATGA
ggttaac putative branch site (score: 3)
ttgaatta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgacatgttcatttgcacatatgagcattttggacattatgactgattggttaacttgaattagGTTTGGGATTATCAAACAAAGAGCTGTGTTCAAACACTTGAAGGACATGCACATAATGTCTCTGCTGTATGTTTCCATCCTGAGCTTCCAATAATAATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT