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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgcatttatagattatgcagcagaatatatgtcattttattgtacattacatgtgtcagactcattagtgagttacaacatctgctgattgcttgttggacccattctcagAAACAGGAATTTGGACTTAAGCCAATGAATTGTCCAGGACACTGTCTAATGTTTGCTAATAGGGTTCGGTCGTATAGAG

Basic information

species Zea mays
transcript GRMZM2G439885_T01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G439885_T01 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os08g19850.1 (Oryza sativa), 3'ss of exon 10
gtatgtgcatttatagattatgcagcagaatatatgtcattttattgtacattacatgtgtcagactcattagtgagttacaacatctgctgattgcttgttggacccattctc--------agAAACAGGAATTTGGACTTAAGCCAATGAATTGTCCAGGACACTGTCTAATGTTTGCTAATAGGGTTCGGTCGTATAGAG
      | |  | |||  | |||||  || |   | |     |||| || ||||||| |    ||   ||||  ||  |  |     | |||  |||||||||| |  |||||         |||||||||||||||| || ||||||||||||||||| || || || ||||||||||   | |||||||| || || ||||
------gtaagtctag--tgtgcagaggatttgctctgtacatattatagattacattt--tggatgaatta-cgatcttta----ttactgggtgcttgttggtcttattcttgcagATTGAGAAACAGGAATTTGGTCTCAAGCCAATGAATTGTCCTGGCCATTGCCTAATGTTTGAGCACAGGGTTCGTTCATACAGAG

upper sequence: GRMZM2G439885_T01 (Zea mays), 3'ss of exon 8
lower sequence: Vv01s0026g00340.t01 (Vitis vinifera), 3'ss of exon 10
gtatgtgcatttatagattatgcagcagaatatatgtcattttattgtacattacatgtgtcagactcattagtgagttacaacatctgctgattgcttgttggacccattctcagAAACAGGAATTTGGACTTAAGCCAATGAATTGTCCAGGACACTGTCTAATGTTTGCTAATAGGGTTCGGTCGTATAGAG
   |   |||||||   | || |      |  ||| || || |||  ||  || | ||  |||   | | |     ||||  | | ||| ||  |  || ||||    |   | | ||||| || ||||| ||||||||||||||||| ||||| |||||| | |||||||   |||| ||||| || |||||||
-cttaaacatttatc--tcatccttggagaagtatttctttatatcttatgtt-cctggatcatgtttactt---tgttatga-aactg-tgtctagtttttgg-tgtagGTTGAAAAACAAGAGTTTGGGCTTAAGCCAATGAATTGCCCAGGGCACTGTTTGATGTTTGAACATAGAGTTCGTTCATATAGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagactcattagtgagttacaacatctgctgattgcttgttggacccattctcagAAACAGGAATTTGGACTTAAGCCAATGAATTGTCCAGGACACTGTCTAATGTTTGCTAATAGGGTTCGGTCGTATAGAG
                          tgctgat  putative branch site (score: 3)
                                            cccattctc  putative PPT