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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcatcctcacctcaatccctgcgtactggagttgtttcatcatttttttcttggcttagcgatttaaattgctctctgaactttatgtgttgggaatgtcagAAATGAGCAGCTTGACAGACCTGATAACTAGCATTCTTCAGAGGGTCGGCGATGACATTGACAGAAAACACCTGCCACAAATTTCG

Basic information

species Zea mays
transcript GRMZM2G438077_T01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G438077_T01 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os01g69900.1 (Oryza sativa), 3'ss of exon 11
gtatgcatcctcacctcaatcc---------ctgcgt-actggagttgtttca-----tcatttttttcttggcttagcgatttaaattgctctctgaactttatgtgt-------tgggaatgtcagAAATGAGCAGCTTGACAGACCTGATAACTAGCATTCTTCAGAGGGTCGGCGATGACATTGACAGAAAACACCTGCCACAAATTTCG
||||||||| |    |||  ||          || || |     ||| ||||      || |||| || |     ||   ||||| ||||    ||    || ||||||       |   ||  ||||||| |||||||||||||||  ||||||| |||||||| |||||| | ||||||||||| || |||||| |||| |||||||||| |
gtatgcatcttagtttcatgccaacagggaattgtgttatcaatgttctttctgcccttccttttgttgtatttctaattatttatattgtatccttggtttcatgtgtgatatgcttcaaacttcagAAACGAGCAGCTTGACAGAGTTGATAACCAGCATTCTACAGAGGCTTGGCGATGACATCGATAGAAAAAACCTACCACAAATTTTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcttggcttagcgatttaaattgctctctgaactttatgtgttgggaatgtcagAAATGAGCAGCTTGACAGACCTGATAACTAGCATTCTTCAGAGGGTCGGCGATGACATTGACAGAAAACACCTGCCACAAATTTCG
              atttaaatt  TA-rich tract