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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaggatccatattttgttttggaatcccattcgggagcgggaccaaactgaccttaacgcaatgtgcctctcttggacagTCCACAGCCTCCTACAAAGCCGCTGCTCGTCTTGCGAGTGCGACTCCACCTCCGGCTCACATCCTCAGCAGAGGCATTGGGTGGCAG

Basic information

species Zea mays
transcript GRMZM2G437859_T02
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G437859_T02 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os01g55500.4 (Oryza sativa), 3'ss of exon 8
gtgaggatcc--atattttgttttggaatcccattcgggagcgggaccaaactgaccttaacgcaatgtgcctctcttggacagTCCACAGCCTCCTACAAAGCCGCTGCTCGTCTTGCGAGTGCGACTCCACCTCCGGCTCACATCCTCAGCAGAGGCATTGGGTGGCAG
|| | |  ||  |||  | || ||      |||||     ||| | |     ||| |||||| ||| |  ||| ||||||||||||||| || || |||||||| || ||||| ||||| ||||| ||||||||||| || || |||||||| ||||||||||||||||||
gtaatgcccctcataactcgtcttcaggagccatttctttgcgtggcagccttgaacttaactcaaag--cctgtcttggacagTCCACGGCTTCTTACAAAGCTGCGGCTCGGCTTGCAAGTGCTACTCCACCTCCAGCACATATCCTCAGTAGAGGCATTGGGTGGCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74240436|gb|DT648350.1|DT648350
EST:     CCGGCCAGTCATTTGGGATTGTGTCTGCTGTTTTGGTCTCGCTGGTAGAG                         TCCACAGCCTCCTACAAAGCCGCTGCTCGTCTTGCGAGTGCGACTCCACCT
genomic: CCGGCCAGTCATTTGGGATTGTGTCTGCTGTTTTGGTCTCGCTGGTAGAGgtgaggatcc ... tcttggacagTCCACAGCCTCCTACAAAGCCGCTGCTCGTCTTGCGAGTGCGACTCCACCT
EST: gi|5055765|gb|AI734652.1|AI734652
EST:     CCGGCCAGTCATTTGGGATTGTGTCTGCTGTTTTGGTCTCGCTGGTAGAG                         TCCACAGCCTCCTACAAAGCCGCTGCTCGGCTTGCGAGTGCGACTCCACCT
genomic: CCGGCCAGTCATTTGGGATTGTGTCTGCTGTTTTGGTCTCGCTGGTAGAGgtgaggatcc ... tcttggacagTCCACAGCCTCCTACAAAGCCGCTGCTCGTCTTGCGAGTGCGACTCCACCT
EST: gi|71431025|gb|DR812075.1|DR812075
EST:     CCGGCCAGTCATTTGGGATTGTGTCTGCTGTTTTGGTCTCGCTGGTAGAG                         TCCACAGCCTCCTACAAAGCCGCTGCTCGTCTTGCGAGTGCGACTCCACCT
genomic: CCGGCCAGTCATTTGGGATTGTGTCTGCTGTTTTGGTCTCGCTGGTAGAGgtgaggatcc ... tcttggacagTCCACAGCCTCCTACAAAGCCGCTGCTCGTCTTGCGAGTGCGACTCCACCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cccattcgggagcgggaccaaactgaccttaacgcaatgtgcctctcttggacagTCCACAGCCTCCTACAAAGCCGCTGCTCGTCTTGCGAGTGCGACTCCACCTCCGGCTCACATCCTCAGCAGAGGCATTGGGTGGCAG
                                       tgcctctctt  CT-rich tract