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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaacgctttcttgcgcccatgattgttcttctctttcacgttccgtcgtcagacgttcaaaactgaaaaaaagagatgctcctgcgaacgacagGGAATCGGCATCCTCCTTGACGGGCTCTTTGGAACGGGGACTGGCTCCACTGTCTCAGT

Basic information

species Zea mays
transcript GRMZM2G437859_T01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G437859_T02 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os01g55500.1 (Oryza sativa), 3'ss of exon 9
gtgaacgctttcttgcgcccatgattgttcttctctttcacgttccgtcgtcagacgttcaaaactgaaaaaaaga-gatgctcctgcgaacgacagGGAATCGGCATCCTCCTTGACGGGCTCTTTGGAACGGGGACTGGCTCCACTGTCTCAGT
||| |   ||   |   || ||  ||  |||| | ||| ||        ||     ||||| | ||| ||  |||  ||| ||||    ||| ||||||||| || ||||| ||||| ||||| ||||||||||| ||||||||||| || |||||
gtggatatttaagtcatcctattgtt--tcttgttttttactcctgaatgtt----gttcagagctgtaattaagttgatactcc-ataaacaacagGGAATTGGTATCCTTCTTGATGGGCTATTTGGAACGGGTACTGGCTCCACCGTGTCAGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211379070|gb|FL028411.1|FL028411
EST:     GTGCGACTCCACCTCCGGCTCACATCCTCAGCAGAGGCATTGGGTGGCAG                         GGAATCGGCATCCTCCTTGACGGGCTCTTTGGAACGGGGACTGGCTCCACT
genomic: GTGCGACTCCACCTCCGGCTCACATCCTCAGCAGAGGCATTGGGTGGCAGgtgaacgctt ... cgaacgacagGGAATCGGCATCCTCCTTGACGGGCTCTTTGGAACGGGGACTGGCTCCACT
EST: gi|149071735|gb|EE160128.2|EE160128
EST:     GACTCCACCTCCCGGCTCACATCCTCAGCAGAGGCATTGGGTGGCAG                         GG-ATCGGGCATCCTCC-TGACGGGGCTCTTTGGAACGGGGACTGGCTCCA
genomic: GACTCCACCT-CCGGCTCACATCCTCAGCAGAGGCATTGGGTGGCAGgtgaacgctt ... cgaacgacagGGAATC-GGCATCCTCCTTGAC-GGGCTCTTTGGAACGGGGACTGGCTCCA
EST: gi|76287139|gb|DV026707.1|DV026707
EST:     GTGCGACTCCACCTCCGGCTCACATCCTCAGCAGAGGCATTGGGTGGCAG                         GGAATCGGCATCCTCCTTGACGGGCTCTTTGGAACGGGGACTGGCTCCACT
genomic: GTGCGACTCCACCTCCGGCTCACATCCTCAGCAGAGGCATTGGGTGGCAGgtgaacgctt ... cgaacgacagGGAATCGGCATCCTCCTTGACGGGCTCTTTGGAACGGGGACTGGCTCCACT
EST: gi|74238881|gb|DT646795.1|DT646795
EST:     GTGCGACTCCACCTCCGGCTCACATCCTCAGCAGAGGCATTGGGTGGCAG                         GGAATCGGCATCCTCCTTGACGGGCTCTTTGGAACGGGGACTGGCTCCACT
genomic: GTGCGACTCCACCTCCGGCTCACATCCTCAGCAGAGGCATTGGGTGGCAGgtgaacgctt ... cgaacgacagGGAATCGGCATCCTCCTTGACGGGCTCTTTGGAACGGGGACTGGCTCCACT
EST: gi|50337438|gb|CO532564.1|CO532564
EST:     GTGCGACTCCACCTCCGGCTCACATCCTCAGCAGAGGCATTGGGTGGCAG                         GGAATCGGCATCCTCCTTGACGGGCTCTTTGGAACGGGGACTGGCTCCACT
genomic: GTGCGACTCCACCTCCGGCTCACATCCTCAGCAGAGGCATTGGGTGGCAGgtgaacgctt ... cgaacgacagGGAATCGGCATCCTCCTTGACGGGCTCTTTGGAACGGGGACTGGCTCCACT
EST: gi|71310985|gb|DR791794.1|DR791794
EST:     TCAGCAGAGGCATTGGGTGGCAG                         GGAATCGGCATCCTCCTTGACGGGCTTTTTGGAACGGGGACTGGCTCCACT
genomic: TCAGCAGAGGCATTGGGTGGCAGgtgaacgctt ... cgaacgacagGGAATCGGCATCCTCCTTGACGGGCTCTTTGGAACGGGGACTGGCTCCACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttccgtcgtcagacgttcaaaactgaaaaaaagagatgctcctgcgaacgacagGGAATCGGCATCCTCCTTGACGGGCTCTTTGGAACGGGGACTGGCTCCACTGTCTCAGT
                                       ctcctgc  CT-rich tract
                   aaaactgaaaaaaa  TA-rich tract