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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatccatagttcatacatagatagatagatcatagttcataggaatccaagacacgtctttttctaacagtatccattcctgtgcttgtgcttgcagTCCATCAATGTCATGGACTACTCTTTGCTGGTTGGAGTGGACAGGCAGAAGCGTGAGCTGGTATTCGGCATCATCGACTACCTGAGGCAGTATACATGGG

Basic information

species Zea mays
transcript GRMZM2G428386_T01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G428386_T01 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os04g59540.1 (Oryza sativa), 3'ss of exon 8
gtatccatagttcatacatagatagatagatcatagttcataggaatc-caagacacgtctttttctaacagtatccattcctg----tgcttg-tgcttgcagTCCATCAATGTCATGGACTACTCTTTGCTGGTTGGAGTGGACAGGCAGAAGCGTGAGCTGGTATTCGGCATCATCGACTACCTGAGGCAGTATACATGGG
                 |   |  ||||  ||||       | | ||  | |  || || | | ||| ||| |||    |        | ||   |  |||||||| || ||||| ||||||||||| || ||||| ||||||||||   | |||| |||| | ||||| |||||||| || ||||| ||||||||||||||||
---------------gtaagtactgatatttcatttcaaccacgtataaccaatcatgt-tctctcttacaatatgagctgacagaaatactaaatttttgcagTCAATTAATGTTATGGACTACTCGTTACTGGTGGGAGTGGACAAAGAAAAGCATGAGTTTGTATTTGGCATCATAGATTACCTAAGGCAGTATACATGGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaatccaagacacgtctttttctaacagtatccattcctgtgcttgtgcttgcagTCCATCAATGTCATGGACTACTCTTTGCTGGTTGGAGTGGACAGGCAGAAGCGTGAGCTGGTATTCGGCATCATCGACTACCTGAGGCAGTATACATGGG
                   ttctaac  putative branch site (score: 1)
                tttttctaa  TA-rich tract