1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtggaaactcttttctctcctgaatctggttagcaattttgagaattagttaaggaggcggcagcatgggttgacctatcgattattcagcctgaatcatgctacactctattcagttgtgcgatgtagttggtaatctgtggccacgttgaaattccagGTTCCACACTGGAGCCGAACTCCTCCGCACGGACACCCAATGCACGGATGCTTCCTTGAAAGCGCTGTGGCAACACTCGGACTCGATCATGTGCTGTTCC
species | Zea mays |
transcript | GRMZM2G423337_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GGATCTCCTGAGGCACACACGCTGGCAAGGTGGATCGGCAGGAGCTACAG GTTCCACACTGGAGCCGAACTCCTCCGCACGGACACCCAATGCACGGATGCEST: gi|71298034|gb|DR784986.1|DR784986
genomic: GGATCTCCTGAGGCACACACGCTGGCAAGGTGGATCGGCAGGAGCTACAGgtggaaactc ... gaaattccagGTTCCACACTGGAGCCGAACTCCTCCGCACGGACACCCAATGCACGGATGC
EST: GGATCTCCTGAGGCACACACGCTGGCAAGGTGGATCGGCAGGAGCTACAG GTTCCACACTGGAGCCGAACTCCTCCGCACGGACACCCAATGCACGGATGCEST: gi|88756793|gb|DY540934.1|DY540934
genomic: GGATCTCCTGAGGCACACACGCTGGCAAGGTGGATCGGCAGGAGCTACAGgtggaaactc ... gaaattccagGTTCCACACTGGAGCCGAACTCCTCCGCACGGACACCCAATGCACGGATGC
EST: GGATCTCCTGAGGCACACACGCTGGCAAGGTGGATCGGCAGGAGCTACAG GTTCCACACTGGAGCCGAACTCCTCCGCACGGACACCCAATGCACGGATGCEST: gi|71298032|gb|DR784985.1|DR784985
genomic: GGATCTCCTGAGGCACACACGCTGGCAAGGTGGATCGGCAGGAGCTACAGgtggaaactc ... gaaattccagGTTCCACACTGGAGCCGAACTCCTCCGCACGGACACCCAATGCACGGATGC
EST: GGATCTCCTGAGGCACACACGCTGGCAAGGTGGATCGGCAGGAGCTACAG GTTCCACACTGGAGCCGAACTCCTCCGCACGGACACCCAATGCACGGATGCEST: gi|32847407|gb|CD987088.1|CD987088
genomic: GGATCTCCTGAGGCACACACGCTGGCAAGGTGGATCGGCAGGAGCTACAGgtggaaactc ... gaaattccagGTTCCACACTGGAGCCGAACTCCTCCGCACGGACACCCAATGCACGGATGC
EST: GGATCTCCTGAGGCACACACGCTGGCAAGGTGGATCGGCAGGAGCTACAG GTTCCACACTGGAGCCGAACTCCTCCGCACGGACACCCAATGCACGGATGCEST: gi|60396119|gb|DN228988.1|DN228988
genomic: GGATCTCCTGAGGCACACACGCTGGCAAGGTGGATCGGCAGGAGCTACAGgtggaaactc ... gaaattccagGTTCCACACTGGAGCCGAACTCCTCCGCACGGACACCCAATGCACGGATGC
EST: GGATCTCCTGAGGCACACACGCTGGCAAGGTGGATCGGCAGGAGCTACAG GTTCCACACTGGAGCCGAACTCCTCCGCACGGACACCCAATGCACGGATGCEST: gi|60354408|gb|DN221381.1|DN221381
genomic: GGATCTCCTGAGGCACACACGCTGGCAAGGTGGATCGGCAGGAGCTACAGgtggaaactc ... gaaattccagGTTCCACACTGGAGCCGAACTCCTCCGCACGGACACCCAATGCACGGATGC
EST: GGATCTCCTGAGGCACACACGCTGGCAAGGTGGATCGGCAGGAGCTACAG GTTCCACACTGGAGCCGAACTCCTCCGCACGGACACCCAATGCACGGATGCEST: gi|78116184|gb|DV534571.1|DV534571
genomic: GGATCTCCTGAGGCACACACGCTGGCAAGGTGGATCGGCAGGAGCTACAGgtggaaactc ... gaaattccagGTTCCACACTGGAGCCGAACTCCTCCGCACGGACACCCAATGCACGGATGC
EST: GGATCTCCTGAGGCACACACGCTGGCAAGGTGGATCGGCAGGAGCTACAG GTTCCACACTGGAGCCGAACTCCTCCGCACGGACACCCAATGCACGGATGC
genomic: GGATCTCCTGAGGCACACACGCTGGCAAGGTGGATCGGCAGGAGCTACAGgtggaaactc ... gaaattccagGTTCCACACTGGAGCCGAACTCCTCCGCACGGACACCCAATGCACGGATGC
actctattcagttgtgcgatgtagttggtaatctgtggccacgttgaaattccagGTTCCACACTGGAGCCGAACTCCTCCGCACGGACACCCAATGCACGGATGCTTCCTTGAAAGCGCTGTGGCAACACTCGGACTCGATCATGTGCTGTTCC
ttgaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtggaaactcttttctctcctgaatctggttagcaattttgagaattagttaaggaggcggcagcatgggttgacctatcgattattcagcctgaatcatgctacactctattcagttgtgcgatgtagttggtaatctgtggccacgttgaaattccagGTTCCACACTGGAGCCGAACTCCTCCGCACGGACACCCAATGCACGGATGCTTCCTTGAAAGCGCTGTGGCAACACTCGGACTCGATCATGTGCTGTTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT