1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtgataaacatgaaataaagaaaatgatctaacacgccctggtttactatgaactgacttgtcttttctctatcgtccacttttagGTTTTCTGCACAAAAAGTAAGCCTAATTGCAATTCATGTCCAATGAGAGCTGAATGTAAGCACTTTGCTAGTGCATTTGCAAG
species | Zea mays |
transcript | GRMZM2G422464_T02 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TACATTGTATGAGCTTCACTACCAAATGATTACTTTTGGAAAG GTTTTCTGCACAAAAAGTAAGCCTAATTGCAATTCATGTCCAATGAGAGCTEST: gi|71773231|gb|DR971140.1|DR971140
genomic: TACATTGTATGAGCTTCACTACCAAATGATTACTTTTGGAAAGgtgataaaca ... ccacttttagGTTTTCTGCACAAAAAGTAAGCCTAATTGCAATTCATGTCCAATGAGAGCT
EST: GTATGAGCTTCACTACCAAATGATTACTTTTTGGAAAG GTTTTCTGCACAAAAAGTAAGCCTAATTGCAATTCATGTCCAATGAGAGCTEST: gi|31355817|gb|CD440174.1|CD440174
genomic: GTATGAGCTTCACTACCAAATGATTACTTTT-GGAAAGgtgataaaca ... ccacttttagGTTTTCTGCACAAAAAGTAAGCCTAATTGCAATTCATGTCCAATGAGAGCT
EST: GTATGAGCTTCACTACCAAATGATTACTTTTGGAAAG GTTTTCTGCACAAAAAGTAAGCCTAATTGCAATTCATGTCCAATGAGAGCT
genomic: GTATGAGCTTCACTACCAAATGATTACTTTTGGAAAGgtgataaaca ... ccacttttagGTTTTCTGCACAAAAAGTAAGCCTAATTGCAATTCATGTCCAATGAGAGCT
acacgccctggtttactatgaactgacttgtcttttctctatcgtccacttttagGTTTTCTGCACAAAAAGTAAGCCTAATTGCAATTCATGTCCAATGAGAGCTGAATGTAAGCACTTTGCTAGTGCATTTGCAAG
aactgac putative branch site (score: 118)
cttgtcttttctctat CT-rich tract
tttactat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgataaacatgaaataaagaaaatgatctaacacgccctggtttactatgaactgacttgtcttttctctatcgtccacttttagGTTTTCTGCACAAAAAGTAAGCCTAATTGCAATTCATGTCCAATGAGAGCTGAATGTAAGCACTTTGCTAGTGCATTTGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA