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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atggtagttcatgacttacaagtgatgaagtgaatgataagtaaacacttataagcacttctattttgattttgctcatgttttgtcttgacttggacagGAATTTGTCACTTTGAAGGCTATATTTAAATCACATGTGCTGAGGGTGCACAAATCCAAATTTGCACAG

Basic information

species Zea mays
transcript GRMZM2G415846_T02
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G415846_T01 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os06g47350.2 (Oryza sativa), 3'ss of exon 9
atggtagttcatgacttacaagtgatgaagtgaatgataagtaaacacttataa---gcacttctattttgattttgctcatgttttgtcttgacttggacagGAATTTGTCACTTTGAAGGCTATATTTAAATCACATGTGCTGAGGGTGCACAAATCCAAATTTGCACAG
     |||  |  | ||     ||| | |   |  ||||| | |||  || ||    | | |  | | |     ||  ||||  ||||  ||||  ||||||||| |||| || | ||||| |||| |||  | ||  |||||| |||||||||||||||||||||||||||
-aaccagt--accatttctttctgaagtatatacagataaatgaactattttaccctgtattgttgtctgttggttcttcatagtttggtttgaactggacagGAGTTTGACATTCTGAAGACTATCTTTCGAGCATCTGTGCTAAGGGTGCACAAATCCAAATTTGCACAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21390134|gb|BQ528183.1|BQ528183
EST:     TGTGTGAGCACCTCAAGTCACGTGTAGAAGAACCTGAGCGCCTAATTAAG                         GAA-TTGTCACTTTGAAGGCTATATTTAAATCACATGTGCTGAGGGTGCAC
genomic: TGTGTGAGCACCTCAAGTCACGTGTAGAAGAACCTGAGCGCCTAATTAAGgtgagcacat ... acttggacagGAATTTGTCACTTTGAAGGCTATATTTAAATCACATGTGCTGAGGGTGCAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacttataagcacttctattttgattttgctcatgttttgtcttgacttggacagGAATTTGTCACTTTGAAGGCTATATTTAAATCACATGTGCTGAGGGTGCACAAATCCAAATTTGCACAG
                                        tcttgac  putative branch site (score: 3)
             ttctattttgatttt  TA-rich tract