1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...atggtagttcatgacttacaagtgatgaagtgaatgataagtaaacacttataagcacttctattttgattttgctcatgttttgtcttgacttggacagGAATTTGTCACTTTGAAGGCTATATTTAAATCACATGTGCTGAGGGTGCACAAATCCAAATTTGCACAG
species | Zea mays |
transcript | GRMZM2G415846_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CCTCAAGTCACGTGTAGAAGAACCTGAGCGCCTAATTAAG GAATTTGTCACTTTGAAGGCTATATTTAAATCACATGTGCTGAGGGTGCACEST: gi|93283859|gb|EB676123.1|EB676123
genomic: CCTCAAGTCACGTGTAGAAGAACCTGAGCGCCTAATTAAGgtgagcacat ... acttggacagGAATTTGTCACTTTGAAGGCTATATTTAAATCACATGTGCTGAGGGTGCAC
EST: TGTGTGAGCACCTCAAGTCACGTGTAGAAGAACCTGAGCGCCTAATTAAG GAATTTGTCACTTTGAAGGCTATATTTAAATCACATGTGCTGAGGGTGCACEST: gi|21843184|gb|BQ703750.1|BQ703750
genomic: TGTGTGAGCACCTCAAGTCACGTGTAGAAGAACCTGAGCGCCTAATTAAGgtgagcacat ... acttggacagGAATTTGTCACTTTGAAGGCTATATTTAAATCACATGTGCTGAGGGTGCAC
EST: -GTGTGAGCACCTCAAGTCACGTGTAGAAGAACCTGAGCGCCTAATTAAG GAATTTGTCACTTTGAAGGCTATATTTAAATCACATGTGCTGAGGGTGCACEST: gi|26457293|gb|CA828876.1|CA828876
genomic: TGTGTGAGCACCTCAAGTCACGTGTAGAAGAACCTGAGCGCCTAATTAAGgtgagcacat ... acttggacagGAATTTGTCACTTTGAAGGCTATATTTAAATCACATGTGCTGAGGGTGCAC
EST: TGTGTGAGCACCTCAAGTCACGTGTAGAAGAACCTGAGCGCCTAATTAAG GAATTTGTCACTTTGAAGGCTATATTTAAATCACATGTGCTGAGGGTGCACEST: gi|21390134|gb|BQ528183.1|BQ528183
genomic: TGTGTGAGCACCTCAAGTCACGTGTAGAAGAACCTGAGCGCCTAATTAAGgtgagcacat ... acttggacagGAATTTGTCACTTTGAAGGCTATATTTAAATCACATGTGCTGAGGGTGCAC
EST: TGTGTGAGCACCTCAAGTCACGTGTAGAAGAACCTGAGCGCCTAATTAAG GAA-TTGTCACTTTGAAGGCTATATTTAAATCACATGTGCTGAGGGTGCAC
genomic: TGTGTGAGCACCTCAAGTCACGTGTAGAAGAACCTGAGCGCCTAATTAAGgtgagcacat ... acttggacagGAATTTGTCACTTTGAAGGCTATATTTAAATCACATGTGCTGAGGGTGCAC
cacttataagcacttctattttgattttgctcatgttttgtcttgacttggacagGAATTTGTCACTTTGAAGGCTATATTTAAATCACATGTGCTGAGGGTGCACAAATCCAAATTTGCACAG
tcttgac putative branch site (score: 203)
ttctattttgatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atggtagttcatgacttacaagtgatgaagtgaatgataagtaaacacttataagcacttctattttgattttgctcatgttttgtcttgacttggacagGAATTTGTCACTTTGAAGGCTATATTTAAATCACATGTGCTGAGGGTGCACAAATCCAAATTTGCACAG
- - - gttcatg
- - - - - - - - - - - tgatgaa
- - - - - - - - - - - - - - -gtgaatg
- - - - - - - - - - - - - - - - - - - - - aaacact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttttgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttttg