1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...caaaatctacagagctttccttaggggcgcttctttcttgctaatggtgcactgaatcttcctatgatgctcgactgaccgactcatcttgttttcacagGACGCTGTTACACTTGTGAAAATGGAGGAGGAACCAGAGGCTGCAGCTCGGAAGCTGACAGAGACCGCGTTCTCTCGCGGGAGCGGCGATAACATCACGT
species | Zea mays |
transcript | GRMZM2G412937_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AGTTTCTAATTATAGCTAGTGATGGGCTGTGGGATGTGGTTTCGAATGAG GACGCTGTTACACTTGTGAAAATGGAGGAGGAACCAGAGGCTGCAGCTCGGEST: gi|67013545|gb|CO442294.1|CO442294
genomic: AGTTTCTAATTATAGCTAGTGATGGGCTGTGGGATGTGGTTTCGAATGAGgttagtttgt ... gttttcacagGACGCTGTTACACTTGTGAAAATGGAGGAGGAACCAGAGGCTGCAGCTCGG
EST: AGTTTCTAATTATAGCTAGTGATGGGCTGTGGGATGTGGTTTCGAATGAG GACGCTGTTACACTTGTGAAAATGGAGGAGGAACCAGAGGCTGCAGCTCGGEST: gi|211041804|gb|FL481852.1|FL481852
genomic: AGTTTCTAATTATAGCTAGTGATGGGCTGTGGGATGTGGTTTCGAATGAGgttagtttgt ... gttttcacagGACGCTGTTACACTTGTGAAAATGGAGGAGGAACCAGAGGCTGCAGCTCGG
EST: AGTTTCTAATTATAGCTAGTGATGGGCTGTGGGATGTGGTTTCGAATGAG GACGCTGTTACACTTGTGAAAATGGAGGAGGAACCAGAGGCTGCAGCTCGGEST: gi|148979523|gb|EE026706.2|EE026706
genomic: AGTTTCTAATTATAGCTAGTGATGGGCTGTGGGATGTGGTTTCGAATGAGgttagtttgt ... gttttcacagGACGCTGTTACACTTGTGAAAATGGAGGAGGAACCAGAGGCTGCAGCTCGG
EST: AGTTTCTAATTATAGCTAGTGATGGGCTGTGGGATGTGGTTTCGAATGAG GACGCTGTTACACTTGTGAAAATGGAGGAGGAACCAGAGGCTGCAGCTCGG
genomic: AGTTTCTAATTATAGCTAGTGATGGGCTGTGGGATGTGGTTTCGAATGAGgttagtttgt ... gttttcacagGACGCTGTTACACTTGTGAAAATGGAGGAGGAACCAGAGGCTGCAGCTCGG
ggtgcactgaatcttcctatgatgctcgactgaccgactcatcttgttttcacagGACGCTGTTACACTTGTGAAAATGGAGGAGGAACCAGAGGCTGCAGCTCGGAAGCTGACAGAGACCGCGTTCTCTCGCGGGAGCGGCGATAACATCACGT
gactgac putative branch site (score: 83)
ctcatcttgttttc putative PPT
ttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaaatctacagagctttccttaggggcgcttctttcttgctaatggtgcactgaatcttcctatgatgctcgactgaccgactcatcttgttttcacagGACGCTGTTACACTTGTGAAAATGGAGGAGGAACCAGAGGCTGCAGCTCGGAAGCTGACAGAGACCGCGTTCTCTCGCGGGAGCGGCGATAACATCACGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - -cgcttct
- - - - - - - - - - - - - - - - - ttcttgc
- - - - - - - - - - - - - - - - - - - - - - -ggtgcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatgctc