Sequence
atgc intronic sequence ATGC exonic sequencegtacaagctgttctatatcctttttgttgtgtttatggacttctaataacctgagttcagtctgtctgtgaagtttgttcattacaagttccttttttggtacagTTGTTTTTATTGGCACAACGCTCTTTGCTTTACAACAGTTATCCGGCATAAATTCTGTGTTCTATTTCTCATCAACTGTATTCAGAAGTGTGGGGGTGCC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G412899_T05 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os02g17500.1 (Oryza sativa), 3'ss of exon 9
gtacaagctgttctatatcct---ttttgttgtgtttatggacttc-taataacctgagttcagtctgtctgtgaagtttgttcattacaagttccttttttggtacagTTGTTTTTATTGGCACAACGCTCTTTGCTTTACAACAGTTATCCGGCATAAATTCTGTGTTCTATTTCTCATCAACTGTATTCAGAAGTGTGGGGGTGCC
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gtacaagctgttatgtgttttccattctgttgtgtatttgcgctaaactataaccttatttatgtttggccttgaagtttgttcattacaagtcccttttt-gctacagTTGTTTTTATTGGCACAACGCTCTTTGCTTTACAACAGTTATCCGGCATAAATTCTGTGTTCTATTTCTCATCAACTGTGTTCAGAAGTGTGGGTGTGCC
upper sequence: GRMZM2G412899_T05 (Zea mays), 3'ss of exon 9
lower sequence: GLYMA07G09270.3 (Glycine max), 3'ss of exon 9
--------------------------gtacaagctgttctatatcctttttgttgtgtttatggacttctaataacctgagttcagtctgtctgtgaagtttgttcattacaagttccttttttggtacagTTGTTTTTATTGGCACAACGCTCTTTGCTTTACAACAGTTATCCGGCATAAATTCTGTGTTCTATTTCTCATCAACTGTATTCAGAAGTGTGGGGGTGCC
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gtatgcatttttcctggtttgtctctgggatagttgtgacttgtgagtgtatttgccattgttgttatctggtcac-tggtttccttaggtttccaaaagttattttttattcacaagttcgttt-tgcagTTGTTTTTATTGGATCAACCCTATTTGCTTTACAACAGCTATCTGGTATAAATGCTGTGTTTTATTTCTCTTCAACTGTTTTTAAAAGTGCTGGAGTGCC
upper sequence: GRMZM2G412899_T05 (Zea mays), 3'ss of exon 9
lower sequence: GLYMA09G32510.1 (Glycine max), 3'ss of exon 9
gtacaagctgttctatatcctttttgttgtgtttatggacttctaataacctgagttcagtctgtctgtgaagtttgttcattacaagttccttttttggtacagTTGTTTTTATTGGCACAACGCTCTTTGCTTTACAACAGTTATCCGGCATAAATTCTGTGTTCTATTTCTCATCAACTGTATTCAGAAGTGTGGGGGTGCC--------------------------------------------
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--------------------------------------------------------------------------------------------------------------tttattggatcaaccctatttgctttacaacagctatctggtataaatgctgtgttttatttctcttcaactgtttttaaaagtgctggagtcccatcagACATTGCAAATGTCTGCATAGGAATCGCTAATTTGGCAG
upper sequence: GRMZM2G412899_T05 (Zea mays), 3'ss of exon 9
lower sequence: AT1G67300.1 (Arabidopsis thaliana), 3'ss of exon 9
gtacaagctgttctatatcctttttgttgtgtttatggacttctaataacctgagttca-------gtctgtctgtgaagttt---gttcattacaagttccttttt--tggtacagTTGTTTTTATTGGCACAACGCTCTTTGCTTTACAACAGTTATCCGGCATAAATTCTGTGTTCTATTTCTCATCAACTGTATTCAGAAGTGTGGGGGTGCC
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gtatgtagaactctttgc---ttttgtcccgcggaaggaactgcaaacatgtatgttgattgttgtgtctatttgtttcctgtatagtactttgttattcacttgttccttttgcagTTGTTTTTATTGGATCAACCCTGTTTGCTTTGCAACAGCTATCTGGTATAAATGCTGTTTTTTATTTCTCTTCTACCGTATTCAAAAGTGCTGGAGTACC
upper sequence: GRMZM2G412899_T05 (Zea mays), 3'ss of exon 9
lower sequence: AT1G79820.4 (Arabidopsis thaliana), 3'ss of exon 9
gtacaagctgttctatatcctttttgttgtgtttatggacttctaataacctgagttcagtctgtctgtgaagtttgttcattaca---agttccttttttggtacagTTGTTTTTATTGGCACAACGCTCTTTGCTTTACAACAGTTATCCGGCATAAATTCTGTGTTCTATTTCTCATCAACTGTATTCAGAAGTGTGGGGGTGCC
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------ccaaaaaaatgacattttcatt-tgccaaaaacatacatatagatgatgtgtagcctcttaattaccttcattt-ttacgtttaaattttctccgattgcagTGGTTTTCATTGGATCTACCCTTTTTGCTTTACAACAGTTGTCTGGGATAAATGCTGTGTTCTATTTCTCATCAACTGTCTTCAAGAAAGCTGGTGTACC
upper sequence: GRMZM2G412899_T05 (Zea mays), 3'ss of exon 9
lower sequence: Vv09s0002g04380.t01 (Vitis vinifera), 3'ss of exon 8
gtacaagctgttctatatcctttttgttgtgtttatggacttctaataacctgagttcagtctgtctgtgaagtttgttcattacaagttccttttttggtacagTTGTTTTTATTGGCACAACGCTCTTTGCTTTACAACAGTTATCCGGCATAAATTCTGTGTTCTATTTCTCATCAACTGTATTCAGAAGTGTGGGGGTGCC
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-------------------------gtaatatgc-taaattattagtgttttatccactatgtttattttgagttgatttatctgaatttatttc------acagTGGTTTTCATTGGATCAAGCCTATTTGCTTTACAACAGCTTTCTGGCATAAATGCTGTGTTCTATTTCTCTTCAACTGTCTTCAAAGGAGCTGGAGTACC
upper sequence: GRMZM2G412899_T05 (Zea mays), 3'ss of exon 9
lower sequence: Vv11s0016g03660.t01 (Vitis vinifera), 3'ss of exon 9
--------------------------------------------------gtacaagctgttctatatcctttttgttgtgtttatggacttctaataacctgagttcagtctgtctgtgaagtttgttcattacaagttccttttttggtacagTTGTTTTTATTGGCACAACGCTCTTTGCTTTACAACAGTTATCCGGCATAAATTCTGTGTTCTATTTCTCATCAACTGTATTCAGAAGTGTGGGGGTGCC
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gtagatatgatacttctttggtatgcacctatgagtttgtgagtatgttctcgtctgctttgagatttactgagtgctgctgctgttgccggcacttcttcttattctccttttgcctccaagaatgctttgtattcactgattccttt-tgcagTTGTTTTTATTGGATCAACCCTATTTGCTTTACAACAGCTATCTGGTATAAACGCTGTTTTTTATTTCTCTTCCACTGTATTTAAAAGCGCGGGAGTGCCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71766867|gb|DR964804.1|DR964804EST: TGGAGAAAGTGTCAAGTACTCAGAGTTGTTCTATGGTCGCCACTTCAATG TTGTTTTTATTGGCACAACGCTCTTTGCTTTACAACAGTTATCCGGCATAA
genomic: TGGAGAAAGTGTCAAGTACTCAGAGTTGTTCTATGGTCGCCACTTCAATGgtacaagctg ... tttggtacagTTGTTTTTATTGGCACAACGCTCTTTGCTTTACAACAGTTATCCGGCATAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctgagttcagtctgtctgtgaagtttgttcattacaagttccttttttggtacagTTGTTTTTATTGGCACAACGCTCTTTGCTTTACAACAGTTATCCGGCATAAATTCTGTGTTCTATTTCTCATCAACTGTATTCAGAAGTGTGGGGGTGCC
ttcctttttt CT-rich tract
tttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtacaagctgttctatatcctttttgttgtgtttatggacttctaataacctgagttcagtctgtctgtgaagtttgttcattacaagttccttttttggtacagTTGTTTTTATTGGCACAACGCTCTTTGCTTTACAACAGTTATCCGGCATAAATTCTGTGTTCTATTTCTCATCAACTGTATTCAGAAGTGTGGGGGTGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT