1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatgatcaagcagttctattattgatatacttgtttcttctatatgttgcttgacttgcttctaaagttcacgagctctgtcgcagACCTGGTCCTCTCAAACAAACTAGTAGTTTATGACTTGGAAAAAGAAGTTATTGGATGGACAGACTACAACT
species | Zea mays |
transcript | GRMZM2G411333_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AGACTAAAGATGGGAAAGATATGCTCCTCTTAGGAG ACTTGGTCCTCTCAAACAAACTAGTAGTTTATGACTTGGAAAAAGAAGTTAEST: gi|71309093|gb|DR790816.1|DR790816
genomic: AGACTAAAGATGGGAAAGATATGCTCCTCTTAGGAGgtatgatcaa ... tctgtcgcagACCTGGTCCTCTCAAACAAACTAGTAGTTTATGACTTGGAAAAAGAAGTTA
EST: CCTCTTAGGAG ACCGGGTCCTCTCAAACAAACTAGTAGTTTATGACTTGGAAAAAGAAGTTAEST: gi|78105425|gb|DV523843.1|DV523843
genomic: CCTCTTAGGAGgtatgatcaa ... tctgtcgcagACCTGGTCCTCTCAAACAAACTAGTAGTTTATGACTTGGAAAAAGAAGTTA
EST: GGATGGTGGTGTACAGACTAAAGATGGGAAAGATATGCTCCTCTTAGGAG ACCTGGTCCTCTCAAACAAACTAGTAGTTTATGACTTGGAAAAAGAAGTTAEST: gi|6031461|gb|AW076363.1|AW076363
genomic: GGATGGTGGTGTACAGACTAAAGATGGGAAAGATATGCTCCTCTTAGGAGgtatgatcaa ... tctgtcgcagACCTGGTCCTCTCAAACAAACTAGTAGTTTATGACTTGGAAAAAGAAGTTA
EST: GGATGGTGGTGTACAGACTAAAGATGGGAAAGATATGCTCCTCTTAGGAG ACTTGGTCCTCTCAAACAAACTAGTAGTTTATGACTTGGAAAAAGAAGTTAEST: gi|91051044|gb|EB161462.1|EB161462
genomic: GGATGGTGGTGTACAGACTAAAGATGGGAAAGATATGCTCCTCTTAGGAGgtatgatcaa ... tctgtcgcagACCTGGTCCTCTCAAACAAACTAGTAGTTTATGACTTGGAAAAAGAAGTTA
EST: GGATGGTGGTGTACAGACTAAAGATGGGAAAGATATGCTCCTCTTAGGAG ACCTGGTCCTCTCAAACAAACTAGTAGTTTATGACTTGGAAAAAGAAGTTAEST: gi|32836424|gb|CD976102.1|CD976102
genomic: GGATGGTGGTGTACAGACTAAAGATGGGAAAGATATGCTCCTCTTAGGAGgtatgatcaa ... tctgtcgcagACCTGGTCCTCTCAAACAAACTAGTAGTTTATGACTTGGAAAAAGAAGTTA
EST: ACAGACTAAAGATGGGAAAGATATGCTCCTCTTAGGAG ACCTGGTCCTCTCAAACAAACTAGTAGTTTATGACTTGGAAAAAGAAGTTAEST: gi|5901323|gb|AW042423.1|AW042423
genomic: ACAGACTAAAGATGGGAAAGATATGCTCCTCTTAGGAGgtatgatcaa ... tctgtcgcagACCTGGTCCTCTCAAACAAACTAGTAGTTTATGACTTGGAAAAAGAAGTTA
EST: GGATGGTGGTGTACAGACTAAAGATGGGAAAGATATGCTCCTCTTAGGAG ACTTGGTCCTCTCAAACAAACTAGTAGTTTATGACTTGGAAAAAGAAGTTAEST: gi|78022284|gb|DV490671.1|DV490671
genomic: GGATGGTGGTGTACAGACTAAAGATGGGAAAGATATGCTCCTCTTAGGAGgtatgatcaa ... tctgtcgcagACCTGGTCCTCTCAAACAAACTAGTAGTTTATGACTTGGAAAAAGAAGTTA
EST: GGATGGTGGTGTACAGACTAAAGATGGGAAAGATATGCTCCTCTTAGGAG ACTTGGTCCTCTCAAACAAACTAGTAGTTTATGACTTGGAAAAAGAAGTTAEST: gi|32836575|gb|CD976253.1|CD976253
genomic: GGATGGTGGTGTACAGACTAAAGATGGGAAAGATATGCTCCTCTTAGGAGgtatgatcaa ... tctgtcgcagACCTGGTCCTCTCAAACAAACTAGTAGTTTATGACTTGGAAAAAGAAGTTA
EST: ACAGACTAAAGATGGGAAAGATATGCTCCTCTTAGGAG ACCTGGTCCTCTCAACCAAACTAGTAGTTTATGACTTGGAAAAAGAAGTTAEST: gi|71443427|gb|DR824477.1|DR824477
genomic: ACAGACTAAAGATGGGAAAGATATGCTCCTCTTAGGAGgtatgatcaa ... tctgtcgcagACCTGGTCCTCTCAAACAAACTAGTAGTTTATGACTTGGAAAAAGAAGTTA
EST: GGATGGTGGTGTACAGACTAAAGATGGGAAAGATATGCTCTTCTTAGGAG ACCTGGTCCTCTCAAACAAACTAGTAGTTTATGACTTGGAAAAAGAAGTTAEST: gi|93283751|gb|EB676015.1|EB676015
genomic: GGATGGTGGTGTACAGACTAAAGATGGGAAAGATATGCTCCTCTTAGGAGgtatgatcaa ... tctgtcgcagACCTGGTCCTCTCAAACAAACTAGTAGTTTATGACTTGGAAAAAGAAGTTA
EST: GGATGGTGGTGTACAGACTAAAGATGGGAAAGATATGCTCCTCTTAGGAG ACCTGGTCCTCTCAAACAAACTAGTAGTTTATGACTTGGAAAAAGAAGTTAEST: gi|149010273|gb|EE042100.2|EE042100
genomic: GGATGGTGGTGTACAGACTAAAGATGGGAAAGATATGCTCCTCTTAGGAGgtatgatcaa ... tctgtcgcagACCTGGTCCTCTCAAACAAACTAGTAGTTTATGACTTGGAAAAAGAAGTTA
EST: GGATGGTGGTGTACAGACTAAAGATGGGAAAGATATGCTCCTTTTAGGAG ACCTGGTCCTTTCAAACAAACTAGTAGTTTATGACTTGGAAAAAGAAGTTAEST: gi|211364468|gb|FL432340.1|FL432340
genomic: GGATGGTGGTGTACAGACTAAAGATGGGAAAGATATGCTCCTCTTAGGAGgtatgatcaa ... tctgtcgcagACCTGGTCCTCTCAAACAAACTAGTAGTTTATGACTTGGAAAAAGAAGTTA
EST: GGATGGTGGTGTACAGACTAAAGATGGGAAAGATATGCTCCTCTTAGGAG ACTTGGTCCTCTCAAACAAACTAGTAGTTTATGACTTGGAAAAAGAAGTTAEST: gi|50335616|gb|CO530742.1|CO530742
genomic: GGATGGTGGTGTACAGACTAAAGATGGGAAAGATATGCTCCTCTTAGGAGgtatgatcaa ... tctgtcgcagACCTGGTCCTCTCAAACAAACTAGTAGTTTATGACTTGGAAAAAGAAGTTA
EST: GGATGGTGGTGTACAGACTAAAGATGGGAAAGATATGCTCCTCTTAGGAG ACCTGGTCCTCTCAAACAAACTAGTAGTTTATGACTTGGAAAAAGAAGTTAEST: gi|5668501|gb|AI932016.1|AI932016
genomic: GGATGGTGGTGTACAGACTAAAGATGGGAAAGATATGCTCCTCTTAGGAGgtatgatcaa ... tctgtcgcagACCTGGTCCTCTCAAACAAACTAGTAGTTTATGACTTGGAAAAAGAAGTTA
EST: GGATGGTGGTGTACAGACTAAAGATGGGAAAGATATGCTCCTCTTAGGAG ACTTGGTCCTCTCAAACAAACTAGTAGTTTATGACTTGGAAAAAGAAGTTA
genomic: GGATGGTGGTGTACAGACTAAAGATGGGAAAGATATGCTCCTCTTAGGAGgtatgatcaa ... tctgtcgcagACCTGGTCCTCTCAAACAAACTAGTAGTTTATGACTTGGAAAAAGAAGTTA
tgtttcttctatatgttgcttgacttgcttctaaagttcacgagctctgtcgcagACCTGGTCCTCTCAAACAAACTAGTAGTTTATGACTTGGAAAAAGAAGTTATTGGATGGACAGACTACAACT
ttctaaa putative branch site (score: 5)
ctctgtc putative PPT
ttctatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgatcaagcagttctattattgatatacttgtttcttctatatgttgcttgacttgcttctaaagttcacgagctctgtcgcagACCTGGTCCTCTCAAACAAACTAGTAGTTTATGACTTGGAAAAAGAAGTTATTGGATGGACAGACTACAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA