1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tagtaagattttgcagtgttgtctgtgtatcttttcaggttcgctattcataatagtagtgtcttacattgtgttttttttccgtgcatgaccttggcagGCTGCGAAGAAATTTGTGGAATCTGCTCTTTATCACAGCAAAGATCTTGTGATTGGAAATGGACCTCAGGGCCCTTTTGACCACCACTTCGAGCTCAAGT
species | Zea mays |
transcript | GRMZM2G401934_T03 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GTATTGCTGCTGAATTAGCAAAAGGCGCAACGATGCTGCATGCTGTCCAG GCTGCGAAGAAATTTGTGGAATCTGCTCTTTATCACAGCAAAGATCTTGTGEST: gi|71430480|gb|DR811530.1|DR811530
genomic: GTATTGCTGCTGAATTAGCAAAAGGCGCAACGATGCTGCATGCTGTCCAGgttagtttgc ... accttggcagGCTGCGAAGAAATTTGTGGAATCTGCTCTTTATCACAGCAAAGATCTTGTG
EST: GTTGCACATTAGCTTCATGTATTGCTGCTGAATTAGCAAAAGGCGCAACGATGCTGCATGCTGTCCAG
genomic: GTATTGCTGCTGAATTAGCAAAAGGCGCAACGATGCTGCATGCTGTCCAGgttagtttgc ... accttggcagG
attcataatagtagtgtcttacattgtgttttttttccgtgcatgaccttggcagGCTGCGAAGAAATTTGTGGAATCTGCTCTTTATCACAGCAAAGATCTTGTGATTGGAAATGGACCTCAGGGCCCTTTTGACCACCACTTCGAGCTCAAGT
gtcttac putative branch site (score: 3)
attgtgtttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagtaagattttgcagtgttgtctgtgtatcttttcaggttcgctattcataatagtagtgtcttacattgtgttttttttccgtgcatgaccttggcagGCTGCGAAGAAATTTGTGGAATCTGCTCTTTATCACAGCAAAGATCTTGTGATTGGAAATGGACCTCAGGGCCCTTTTGACCACCACTTCGAGCTCAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - ttttgca
- - - - - - - - - - - - gtgtatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgcatg