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gtaatataatatatagtcagaaaatcaatgtcatatattaggttcttcactcaagtttattgcacaatacctgttacatgcattttctgacacatggtttatggtttacagAGCAGTGAAACTTGAGCAACGATACAAACATGAAAAGTTAATATCTGGGAAGAGCTTTGCACTTCGTCCTGGTGAAAAATATTATTTGGTTCCTTCATCT
species | Zea mays |
transcript | GRMZM2G376074_T02 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ATCTGTAGTCAGGAATTGTCTGATGTTGCTTCTGTTGAGGGTAATCTTAG AGCAGTAAAACTTGAGCAACGACACAAACATGAAAAGTTAATATCTGGGAAEST: gi|32931325|gb|CF036137.1|CF036137
genomic: ATCTGTAGTCAGGAATTGTCTGATGTTGCTTCTGTTGAGGGTAATCTTAGgtaatataat ... tggtttacagAGCAGTGAAACTTGAGCAACGATACAAACATGAAAAGTTAATATCTGGGAA
EST: ATCTGTAGTCAGGAATTGTCTGATGTTGCTTCTGTTGAGGGTAATCTTAG AGCAGTAAAACTTGAGCAACGACACAAACATGAAAAGTTAATATCTGGGAAEST: gi|50331242|gb|CO526368.1|CO526368
genomic: ATCTGTAGTCAGGAATTGTCTGATGTTGCTTCTGTTGAGGGTAATCTTAGgtaatataat ... tggtttacagAGCAGTGAAACTTGAGCAACGATACAAACATGAAAAGTTAATATCTGGGAA
EST: ATCTGTAGTCAGGAATTGTCTGATGTTGCTTCTGTTGAGGGTAATCTTAG AGCAGTGAAACTTGAGCAACGATACAAACATGAAAAGTTAATATCTGGGAAEST: gi|211061749|gb|FL343242.1|FL343242
genomic: ATCTGTAGTCAGGAATTGTCTGATGTTGCTTCTGTTGAGGGTAATCTTAGgtaatataat ... tggtttacagAGCAGTGAAACTTGAGCAACGATACAAACATGAAAAGTTAATATCTGGGAA
EST: ATCTGTAGTCAGGAATTGTCTGATGTTGCTTCTGTTGAGGGTAATCTTAG AGCAGTAAAACTTGAGCAACGACACAAACATGAAAAGTTAATATCTGGGAA
genomic: ATCTGTAGTCAGGAATTGTCTGATGTTGCTTCTGTTGAGGGTAATCTTAGgtaatataat ... tggtttacagAGCAGTGAAACTTGAGCAACGATACAAACATGAAAAGTTAATATCTGGGAA
ttattgcacaatacctgttacatgcattttctgacacatggtttatggtttacagAGCAGTGAAACTTGAGCAACGATACAAACATGAAAAGTTAATATCTGGGAAGAGCTTTGCACTTCGTCCTGGTGAAAAATATTATTTGGTTCCTTCATCT
ttctgac putative branch site (score: 150)
attttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatataatatatagtcagaaaatcaatgtcatatattaggttcttcactcaagtttattgcacaatacctgttacatgcattttctgacacatggtttatggtttacagAGCAGTGAAACTTGAGCAACGATACAAACATGAAAAGTTAATATCTGGGAAGAGCTTTGCACTTCGTCCTGGTGAAAAATATTATTTGGTTCCTTCATCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT