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gtgcggtcttattcacatgtttgatgcatacacttccatactcgtacccaagtgtccaactaatttaatcgtacttttgacttaagGCGCATCCATGGTTCGGAGGTGTTCAGTGGGAGAAGTTGTATCAGATGAAAGCTGCTTTCATACCAGAAGTTAATGGAGAGTTGGATACTCAGAATTTTG
species | Zea mays |
transcript | GRMZM2G375904_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGTGTAATGTTGAGCATCGACTTGGTACAAAAGGAGCCCATGAAATAAAA GCGCATCCATGGTTCGGAGGTGTTCAGTGGGAGAAGTTGTATCAGATGAAAEST: gi|28187719|gb|CB179329.1|CB179329
genomic: TGTGTAATGTTGAGCATCGACTTGGTACAAAAGGAGCCCATGAAATAAAAgtgcggtctt ... ttgacttaagGCGCATCCATGGTTCGGAGGTGTTCAGTGGGAGAAGTTGTATCAGATGAAA
EST: TGTGTAATGTTGAGCATCGACTTGGTACAAAAGGAGCCCATGAAATAAAA GCGCATCCATGGTTCGGAGGTGTTCAGTGGGAGAAGTTGTATCAGATGAAAEST: gi|5901099|gb|AW042199.1|AW042199
genomic: TGTGTAATGTTGAGCATCGACTTGGTACAAAAGGAGCCCATGAAATAAAAgtgcggtctt ... ttgacttaagGCGCATCCATGGTTCGGAGGTGTTCAGTGGGAGAAGTTGTATCAGATGAAA
EST: TGTGTAATGTTGAGCATCGACTTGGTACAAAAGGAGCCCATGATATAAAA GCGCATCCATGGTTCGGAGGTGTTCAGTGGGAGAAGTTGTATCAGATGAAAEST: gi|33285627|gb|CF075422.1|CF075422
genomic: TGTGTAATGTTGAGCATCGACTTGGTACAAAAGGAGCCCATGAAATAAAAgtgcggtctt ... ttgacttaagGCGCATCCATGGTTCGGAGGTGTTCAGTGGGAGAAGTTGTATCAGATGAAA
EST: TGTGTAATGTTGAGCATCGACTTGGTACAAAAGGAGCCCATGAAATAAAA GCGCATCCATGGTTCGGAGGTGTTCAGTGGGAGAAGTTGTATCGGATGAAAEST: gi|211195854|gb|FL001022.1|FL001022
genomic: TGTGTAATGTTGAGCATCGACTTGGTACAAAAGGAGCCCATGAAATAAAAgtgcggtctt ... ttgacttaagGCGCATCCATGGTTCGGAGGTGTTCAGTGGGAGAAGTTGTATCAGATGAAA
EST: CGTGTAATGTTGAGCATCGACTTGGTACAAAAGGAGCCCATGAAATAAAA GCGCATCCATGGTTCGGAGGTGTTCAGTGGGAGAAGTTGTATCAGATGAAAEST: gi|31628455|gb|CD526616.1|CD526616
genomic: TGTGTAATGTTGAGCATCGACTTGGTACAAAAGGAGCCCATGAAATAAAAgtgcggtctt ... ttgacttaagGCGCATCCATGGTTCGGAGGTGTTCAGTGGGAGAAGTTGTATCAGATGAAA
EST: TGTGTAATGTTGAGCATCGACTTGGTACAAAAGGAGCCCATGAAATAAAA GCGCATCCATGGTTCGGAGGTGTTCAGTGGGAGAAGTTGTATCGGATGAAAEST: gi|149049839|gb|EE048526.2|EE048526
genomic: TGTGTAATGTTGAGCATCGACTTGGTACAAAAGGAGCCCATGAAATAAAAgtgcggtctt ... ttgacttaagGCGCATCCATGGTTCGGAGGTGTTCAGTGGGAGAAGTTGTATCAGATGAAA
EST: TGTGTAATGTTGAGCATCGACTTGGTACAAAAGGAGCCCATGAAATAAAA GCGCATCCATGGTTCGGAGGTGTTCAGTGGGAGAAGTTGTATCAGATGAAAEST: gi|32870336|gb|CF010018.1|CF010018
genomic: TGTGTAATGTTGAGCATCGACTTGGTACAAAAGGAGCCCATGAAATAAAAgtgcggtctt ... ttgacttaagGCGCATCCATGGTTCGGAGGTGTTCAGTGGGAGAAGTTGTATCAGATGAAA
EST: TGTGTAATGTTGAGCATCGACTTGGTACAAAAGGAGCCCATGAAATAAAA GCGCATCCATGGTTCGGAGGTGTTCAGTGGGAGAAGTTGTATCAGATGAAAEST: gi|32928081|gb|CF032893.1|CF032893
genomic: TGTGTAATGTTGAGCATCGACTTGGTACAAAAGGAGCCCATGAAATAAAAgtgcggtctt ... ttgacttaagGCGCATCCATGGTTCGGAGGTGTTCAGTGGGAGAAGTTGTATCAGATGAAA
EST: ACAAAAGGAGCCCATGAAATAAAA GCGCATCCATGGTTCGGAGGTGTTCAGTGGGAGAAGTTGTATCAGATGAAA
genomic: ACAAAAGGAGCCCATGAAATAAAAgtgcggtctt ... ttgacttaagGCGCATCCATGGTTCGGAGGTGTTCAGTGGGAGAAGTTGTATCAGATGAAA
acttccatactcgtacccaagtgtccaactaatttaatcgtacttttgacttaagGCGCATCCATGGTTCGGAGGTGTTCAGTGGGAGAAGTTGTATCAGATGAAAGCTGCTTTCATACCAGAAGTTAATGGAGAGTTGGATACTCAGAATTTTG
tactttt CT-rich tract
aactaatttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcggtcttattcacatgtttgatgcatacacttccatactcgtacccaagtgtccaactaatttaatcgtacttttgacttaagGCGCATCCATGGTTCGGAGGTGTTCAGTGGGAGAAGTTGTATCAGATGAAAGCTGCTTTCATACCAGAAGTTAATGGAGAGTTGGATACTCAGAATTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA