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gtacaaaactagtccccttaaatgctcataacaaagttgggccaatatgcttttctttcataacattccaataagtttgagatagagagtgctcagaacaatttgcagaagtgagcttctaccatttagtttgtaggatagttctgacatcaatattgttgtgctggtatactgcagGGTAGGACATCAGTTGATTATCAACCTGTCTACAGTGATGCTGAGGCCAG
species | Zea mays |
transcript | GRMZM2G370852_T02 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GAAAGAACGGTGTCGTGCCTGCTGATGAAACTACATTTAAATACCTTGAG GGTAGGACATCAGTTGATTATCAACCTGTCTACAGTGATGCTGAGGCCAGEST: gi|16916456|gb|BM072849.1|BM072849
genomic: GAAAGAACGGTGTCGTGCCTGCTGATGAAACTACATTTAAATACCTTGAGgtacaaaact ... tatactgcagGGTAGGACATCAGTTGATTATCAACCTGTCTACAGTGATGCTGAGGCCAG
EST: ACTACATTTAAATA-CTTGAG GGTAGGACATCAGTTGATTATCAACCTGTCTACAGTGATGCTGAGGCCAGEST: gi|32846022|gb|CD985703.1|CD985703
genomic: ACTACATTTAAATACCTTGAGgtacaaaact ... tatactgcagGGTAGGACATCAGTTGATTATCAACCTGTCTACAGTGATGCTGAGGCCAG
EST: GAAAGAACGGTGTCGTGCCTGTTGATGAAACTACATTTAAATACCTTGAG GGTAGGACATCAGTTGATTATCAACCTGTCTACAGTGATGCTGAGGCCAGEST: gi|32840107|gb|CD979788.1|CD979788
genomic: GAAAGAACGGTGTCGTGCCTGCTGATGAAACTACATTTAAATACCTTGAGgtacaaaact ... tatactgcagGGTAGGACATCAGTTGATTATCAACCTGTCTACAGTGATGCTGAGGCCAG
EST: GAAAGAACGGTGTCGTGCCTGCTGATGAAACTACATTTAAATACCTTGAG GGTAGGACATCAGTTGATTATCAACCTGTCTACAGTGATGCTGAGGCCAGEST: gi|32840106|gb|CD979787.1|CD979787
genomic: GAAAGAACGGTGTCGTGCCTGCTGATGAAACTACATTTAAATACCTTGAGgtacaaaact ... tatactgcagGGTAGGACATCAGTTGATTATCAACCTGTCTACAGTGATGCTGAGGCCAG
EST: GAAAGAACGGTGTCGTGCCTGCTGATGAAACTACATTTAAATACCTTGAG GGTAGGACATCAGTTGATTATCAACCTGTCTACAGTGATGCTGAGGCCAGEST: gi|211350370|gb|FL368852.1|FL368852
genomic: GAAAGAACGGTGTCGTGCCTGCTGATGAAACTACATTTAAATACCTTGAGgtacaaaact ... tatactgcagGGTAGGACATCAGTTGATTATCAACCTGTCTACAGTGATGCTGAGGCCAG
EST: AAATACCTTGAG GGTAGGACATCAGTTGATTATCAACCTGTCTACAGTGATGCTGAGGCCAGEST: gi|211524232|gb|FL397627.1|FL397627
genomic: AAATACCTTGAGgtacaaaact ... tatactgcagGGTAGGACATCAGTTGATTATCAACCTGTCTACAGTGATGCTGAGGCCAG
EST: GAAAGAACGGTGTCGTGCCTGCTGATGAAACTACATTTAAATACCTTGAG GGTAGGACATCAGTTGATTATCAACCTGTCTACAGTGATGCTCACGCCAG
genomic: GAAAGAACGGTGTCGTGCCTGCTGATGAAACTACATTTAAATACCTTGAGgtacaaaact ... tatactgcagGGTAGGACATCAGTTGATTATCAACCTGTCTACAGTGATGCTGAGGCCAG
catttagtttgtaggatagttctgacatcaatattgttgtgctggtatactgcagGGTAGGACATCAGTTGATTATCAACCTGTCTACAGTGATGCTGAGGCCAG
ttctgac putative branch site (score: 152)
atcaatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacaaaactagtccccttaaatgctcataacaaagttgggccaatatgcttttctttcataacattccaataagtttgagatagagagtgctcagaacaatttgcagaagtgagcttctaccatttagtttgtaggatagttctgacatcaatattgttgtgctggtatactgcagGGTAGGACATCAGTTGATTATCAACCTGTCTACAGTGATGCTGAGGCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG