Sequence
atgc intronic sequence ATGC exonic sequence...ttgtaaatgaatgatcattcagacataaaaaatatggcaagtaatggaatgaagcaagtttcagctgttgctaacacacattattgattcattgttgcagGCGTACCTCGAATACCACCAGATGCCTCAACCTAGGCTCCTACAACTACCTTGGCTTTGCTGCAGCAGATGAGTACTGCACACCACGTGTTATTGAGTCT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G370377_T01 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os11g31640.1 (Oryza sativa), 3'ss of exon 3
ttgtaaatgaatgatcatt-cagacataaaaaatatggcaagtaatggaatgaag--------caagtttcagctgttgctaacacacattattgattcattgttgcagGCGTACCTCGAATACCACCAGATGCCTCAACCTAGGCTCCTACAACTACCTTGGCTTTGCTGCAGCAGATGAGTACTGCACACCACGTGTTATTGAGTCT
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---catatagatgattatgataaaaatatatgatccaaaaataaatgaaatgaaaaacacgcacaagtttcaactgttgtttaaactccaaat------attgtttcagGCGTACTTCAAATACCACAAGATGCCTCAACCTAGGATCCTACAATTACCTTGGATTTGCAGCAGCAGATGAGTACTGCACTCCACTTGTGATCGAGTCT
upper sequence: GRMZM2G370377_T01 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA02G07250.1 (Glycine max), 3'ss of exon 3
ttgtaaatgaatgatcattcagacataaaaaatatggca-agtaatggaatgaagcaagtttcagctgttgctaacacacattattgattcatt-gttgcagGCGTACCTCGAATACCACCAGATGCCTCAACCTAGGCTCCTACAACTACCTTGGCTTTGCTGCAGCAGATGAGTACTGCACACCACGTGTTATTGAGTCT
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ttg-aaatatatatatattt-gttgtaaattttaatttagagcttcagcatgagaaatatatctgatgcctatttttcatactatttctcctcccaatgcagACGGACTGATAAAATAAGTAGATGCCTTAATTTGGGATCATACAACTATCTTGGTTTTGCGGCAGCAGATGAATACTGCACGCCTCGAGTAGTTGATACG
upper sequence: GRMZM2G370377_T01 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA16G26210.1 (Glycine max), 3'ss of exon 3
ttgtaaat-gaatgatcattcagacataaaaaatatggc--aagtaatggaatgaagcaagtttcagctgttgctaacacacattattgattcattgttgcagGCGTACCTCGAATACCACCAGATGCCTCAACCTAGGCTCCTACAACTACCTTGGCTTTGCTGCAGCAGATGAGTACTGCACACCACGTGTTATTGAGTCT
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-tgtggattgaattattattattttatttaattttaagttagagctttagcatgagatatttatccgatgcctatttttcatactatt--tctcctaatgcagACGGACTGATAAAATAAGTAGATGCCTTAATTTGGGATCATACAACTATCTTGGTTTTGCGGCAGCAGATGAATACTGCACACCTAGAGTAGTTGATACG
upper sequence: GRMZM2G370377_T01 (Zea mays), 3'ss of exon 8
lower sequence: Vv14s0068g01300.t01 (Vitis vinifera), 3'ss of exon 3
ttgtaaatgaatgatcattcagacataaaaaatatggcaagtaatggaatgaagcaagtttcagctgttgctaacacacatta-ttgattcattgt-tgcagGCGTACCTCGAATACCACCAGATGCCTCAACCTAGGCTCCTACAACTACCTTGGCTTTGCTGCAGCAGATGAGTACTGCACACCACGTGTTATTGAGTCT
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-tatgg-tgcacaatgatttatggttgccctgatttacattctccagtgtaagctaaaactcataaatttttagtatctatcaactaatcgatttcatgcagACGAACTAGCAATATCAGTCGATGCCTTAACTTGGGATCATACAACTACCTTGGCTTTGCTGCATCGGATGAATACTGCACGCCACGTGTAATTGAATCA
upper sequence: GRMZM2G370377_T01 (Zea mays), 3'ss of exon 8
lower sequence: Vv17s0000g00500.t01 (Vitis vinifera), 3'ss of exon 3
ttgtaaatgaatgatcattcagacataaaaaatatggcaagtaatggaat--gaagcaagtttcagctgttgctaacacacattatt-gattcattgt--tgcagGCGTACCTCGAATACCACCAGATGCCTCAACCTAGGCTCCTACAACTACCTTGGCTTTGCTGCAGCAGATGAGTACTGCACACCACGTGTTATTGAGTCT
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---ttaataaa--gtttttgtatggttgcttgttgggagtctcttggattttgactcaacctgaaatatttggtggatcaattgatttggttcaatctcatgcagACGAACCACAAAGATAAGTAAGTGTCTTAACTTGGGGTCATACAATTACCTTGGATTTGCCGCATCAGATGAATTCTGCACACCACGTGTAATCGAGTCT
upper sequence: GRMZM2G370377_T01 (Zea mays), 3'ss of exon 8
lower sequence: EFJ32734 (Selaginella moellendorffii), 3'ss of exon 3
ttgtaaatgaatgatcattcagacataaaaaatatgg--caagtaatggaatgaagcaagtttcagctgttgctaacacacattattgattcattgttgcagGCGTACCTCGAATACCACCAGATGCCTCAACCTAGGCTCCTACAACTACCTTGGCTTTGCTGCAGCAGATGAGTACTGCACACCACGTGTTATTGAGTCT
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--gtaggtga-taactttttgtgtttggtacttagaattctcgtgcttttggaagtttcttttcgggagcttccctgatccttggattttttgttttgatagTCGGCCCTTCAAGACCCGGAGATGTCTCAACCTTGGCTCTTACAACTACCTTGGATTTGCTGCCGCTGACGAGTACTGTACGCCGCGGGTGATCGAGTCT
upper sequence: GRMZM2G370377_T01 (Zea mays), 3'ss of exon 8
lower sequence: EFJ20689 (Selaginella moellendorffii), 3'ss of exon 3
-ttgtaaatgaatgatcat-tcagacataaaaaatatggcaagtaatggaatgaagcaagtttcagctgttgctaacacacattattgattcattgttgcagGCGTACCTCGAATACCACCAGATGCCTCAACCTAGGCTCCTACAACTACCTTGGCTTTGCTGCAGCAGATGAGTACTGCACACCACGTGTTATTGAGTCT
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gtaggtgataactttttgtgtttggtacttagaat-tctcgtgcttttggaagtttcttttcgggagcttccctgatccttggattttattttttttgatagTCGGCCCTTCAAGACACGGAGATGTCTCAACCTTGGCTCTTACAACTACCTTGGATTTGCTGCCGCTGACGAGTACTGCACGCCCCGGGTGATCGAGTCT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ggaatgaagcaagtttcagctgttgctaacacacattattgattcattgttgcagGCGTACCTCGAATACCACCAGATGCCTCAACCTAGGCTCCTACAACTACCTTGGCTTTGCTGCAGCAGATGAGTACTGCACACCACGTGTTATTGAGTCT
attattgattcatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttgtaaatgaatgatcattcagacataaaaaatatggcaagtaatggaatgaagcaagtttcagctgttgctaacacacattattgattcattgttgcagGCGTACCTCGAATACCACCAGATGCCTCAACCTAGGCTCCTACAACTACCTTGGCTTTGCTGCAGCAGATGAGTACTGCACACCACGTGTTATTGAGTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - atgaatg
- - - - - - - -cattcag
- - - - - - - - - - - - - aaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - -tgaagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acacaca