1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gttggttgtttttatctgcttctggtgctgtttcagtcccttggtgcatcccttgtagattttgatgtctttgtgacattgaccactagtaatgaaatcactcaattttgctgtgagcatgaaatctggtctgttaattgctgtgattccagATGCTAAACAAGGAGCATGAGAAGGCTGAGGATTCGAAACCAGCCGCCATTCCAACTGCTGCCGGTGGAGGGGGAGCTAAATGAGCTTTTGATCACTTAT
species | Zea mays |
transcript | GRMZM2G368908_T02 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GATCCGGAGTGTCATTGCGCTTCACAATTTGATCAACAATAAG ATGCTAAACAAGGAGCATGAGAAGGCTGAGGATTCGAAACCAGCCGCCATTEST: gi|32938917|gb|CF043736.1|CF043736
genomic: GATCCGGAGTGTCATTGCGCTTCACAATTTGATCAACAATAAGgttggttgtt ... gtgattccagATGCTAAACAAGGAGCATGAGAAGGCTGAGGATTCGAAACCAGCCGCCATT
EST: CTTCTCTGATCCGGAGTGTCATTGCGCTTCACAATTTGATCAACAATAAG ATGCTAAACAAGGAGCATGAGAAGGCTGAGGATTCGAAACCAGCCGCCATTEST: gi|26559639|gb|CA831874.1|CA831874
genomic: CTTCTCTGATCCGGAGTGTCATTGCGCTTCACAATTTGATCAACAATAAGgttggttgtt ... gtgattccagATGCTAAACAAGGAGCATGAGAAGGCTGAGGATTCGAAACCAGCCGCCATT
EST: CTTCTCTGATCCGGAGTGTCATTGCGCTTCACAATTTGATCAACAATAAG ATGCTAAACAAGGAGCATGAGAAGGCTGAGGATTCGAAACCAGCCGCCATTEST: gi|22819429|gb|BU499519.1|BU499519
genomic: CTTCTCTGATCCGGAGTGTCATTGCGCTTCACAATTTGATCAACAATAAGgttggttgtt ... gtgattccagATGCTAAACAAGGAGCATGAGAAGGCTGAGGATTCGAAACCAGCCGCCATT
EST: CTTCTCTGATCCGGAGTGTCATTGCGCTTCACAATTTGATCAACAATAAG ATGCTAAACAAGGAGCATGAGAAGGCTGAGGATTCGAAACCAGCCGCCATTEST: gi|18384914|gb|BM418113.1|BM418113
genomic: CTTCTCTGATCCGGAGTGTCATTGCGCTTCACAATTTGATCAACAATAAGgttggttgtt ... gtgattccagATGCTAAACAAGGAGCATGAGAAGGCTGAGGATTCGAAACCAGCCGCCATT
EST: ATTGCGCTTCACAATTTGATCAACAATAAG ATGCTAAACAAGGAGCATGAGAAGGCTGAGGATTCGAAACCAGCCGCCATTEST: gi|78089023|gb|DV517416.1|DV517416
genomic: ATTGCGCTTCACAATTTGATCAACAATAAGgttggttgtt ... gtgattccagATGCTAAACAAGGAGCATGAGAAGGCTGAGGATTCGAAACCAGCCGCCATT
EST: CTTCTCTGATCCGGAGTGTCATTGCGCTTCCCAATTTGATCAACAATAAG ATGCTAAACAAGGAGCATGAGAAGGCTGAGGATTCGAAACCAGCCCCCATTEST: gi|88755237|gb|DY539378.1|DY539378
genomic: CTTCTCTGATCCGGAGTGTCATTGCGCTTCACAATTTGATCAACAATAAGgttggttgtt ... gtgattccagATGCTAAACAAGGAGCATGAGAAGGCTGAGGATTCGAAACCAGCCGCCATT
EST: TTTTTCTGATCCGGAGTGTCATTGCGCTTCACAATTTGATCAACAATAAG ATGCTAAACAAGGAGCATGAGAAGGCTGAGGATTGGAAACCAGCCGCCATTEST: gi|87155995|gb|DY400784.1|DY400784
genomic: CTTCTCTGATCCGGAGTGTCATTGCGCTTCACAATTTGATCAACAATAAGgttggttgtt ... gtgattccagATGCTAAACAAGGAGCATGAGAAGGCTGAGGATTCGAAACCAGCCGCCATT
EST: CTTCTCTGATCCGGAGTGTCATTGCGCTTCACAATTTGATCAACAATAAG ATGCTAAACAAGGAGCATGAGAAGGCTGAGGATTCGAAACCAGCCGCCATTEST: gi|78089024|gb|DV517417.1|DV517417
genomic: CTTCTCTGATCCGGAGTGTCATTGCGCTTCACAATTTGATCAACAATAAGgttggttgtt ... gtgattccagATGCTAAACAAGGAGCATGAGAAGGCTGAGGATTCGAAACCAGCCGCCATT
EST: CTTCTCTGATCCGGAGTGTCATTGCGCTTCACAATTTGATCAACAATAAG ATGCTAAACAAGGAGCATGAGAAGGCTGAGGATTCGAAACCAGCCGCCATTEST: gi|161585959|gb|EY955356.1|EY955356
genomic: CTTCTCTGATCCGGAGTGTCATTGCGCTTCACAATTTGATCAACAATAAGgttggttgtt ... gtgattccagATGCTAAACAAGGAGCATGAGAAGGCTGAGGATTCGAAACCAGCCGCCATT
EST: CGGAGTGTCATTGCCCTTCACAATTTGATCAACAATAAG ATGCTAAACAAGGAGCATGAGAAGGCTGAGGATTCGAAACCAGCCGCCATT
genomic: CGGAGTGTCATTGCGCTTCACAATTTGATCAACAATAAGgttggttgtt ... gtgattccagATGCTAAACAAGGAGCATGAGAAGGCTGAGGATTCGAAACCAGCCGCCATT
tcactcaattttgctgtgagcatgaaatctggtctgttaattgctgtgattccagATGCTAAACAAGGAGCATGAGAAGGCTGAGGATTCGAAACCAGCCGCCATTCCAACTGCTGCCGGTGGAGGGGGAGCTAAATGAGCTTTTGATCACTTAT
tgttaat putative branch site (score: 167)
tgttaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggttgtttttatctgcttctggtgctgtttcagtcccttggtgcatcccttgtagattttgatgtctttgtgacattgaccactagtaatgaaatcactcaattttgctgtgagcatgaaatctggtctgttaattgctgtgattccagATGCTAAACAAGGAGCATGAGAAGGCTGAGGATTCGAAACCAGCCGCCATTCCAACTGCTGCCGGTGGAGGGGGAGCTAAATGAGCTTTTGATCACTTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT