1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagcagacggcaagtaatctgtatgtggcgatgcataataatccggcgcacttttcctgagccaaaacacctgttggtttctgattttcagAGAATCGAGCAAGGATGGCGTCCATGAGTGGCCAGCATCAGCAGCAGCAACCTAACAACTGTACAGCTGTAGACGAACACTAGTCCTGTGTATGCGTTGG
species | Zea mays |
transcript | GRMZM2G360907_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GTACGGGAAGCACATCGTAGCACGTGTGGAGAAGCTAATCGTTACAGGAG AGAATCGAGCAAGGATGGCGTCCATGAGTGGCCAGCATCAGCAGCAGCAACEST: gi|211004127|gb|FL435003.1|FL435003
genomic: GTACGGGAAGCACATCGTAGCACGTGTGGAGAAGCTAATCGTTACAGGAGgtaagcagac ... tgattttcagAGAATCGAGCAAGGATGGCGTCCATGAGTGGCCAGCATCAGCAGCAGCAAC
EST: GTACGGGAAGCACATCGTAGCACGTGTGGAGAAGCTAATCGTTACAGGAG AGAATCGAGCAAGGATGGCGTCCATGAGTGGCCAGCATCAGCAGCAGCAACEST: gi|9733632|gb|BE512384.1|BE512384
genomic: GTACGGGAAGCACATCGTAGCACGTGTGGAGAAGCTAATCGTTACAGGAGgtaagcagac ... tgattttcagAGAATCGAGCAAGGATGGCGTCCATGAGTGGCCAGCATCAGCAGCAGCAAC
EST: GTACGGGAAGCACATCGTAGCACGTGTGGAGAAGCTAATCGTTACAGGAG AGAATCGAGCAAGGATGGCGTCCATGAGTGGCCAGCATCAGCAGCAGCAACEST: gi|211062011|gb|FL123971.1|FL123971
genomic: GTACGGGAAGCACATCGTAGCACGTGTGGAGAAGCTAATCGTTACAGGAGgtaagcagac ... tgattttcagAGAATCGAGCAAGGATGGCGTCCATGAGTGGCCAGCATCAGCAGCAGCAAC
EST: GTACGGGAAGCACATCGTAGCACGTGTGGAGAAGCTAATCGTTACAGGAG AGAATCGAGCAAGGATGGCGTCCATGAGTGGCCAGCATCAGCAGCAGCAAC
genomic: GTACGGGAAGCACATCGTAGCACGTGTGGAGAAGCTAATCGTTACAGGAGgtaagcagac ... tgattttcagAGAATCGAGCAAGGATGGCGTCCATGAGTGGCCAGCATCAGCAGCAGCAAC
aataatccggcgcacttttcctgagccaaaacacctgttggtttctgattttcagAGAATCGAGCAAGGATGGCGTCCATGAGTGGCCAGCATCAGCAGCAGCAACCTAACAACTGTACAGCTGTAGACGAACACTAGTCCTGTGTATGCGTTGG
ttctgat putative branch site (score: 6)
tttct CT-rich tract
tgatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcagacggcaagtaatctgtatgtggcgatgcataataatccggcgcacttttcctgagccaaaacacctgttggtttctgattttcagAGAATCGAGCAAGGATGGCGTCCATGAGTGGCCAGCATCAGCAGCAGCAACCTAACAACTGTACAGCTGTAGACGAACACTAGTCCTGTGTATGCGTTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG