1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtgaatctttggtattttttatgcttggcttttggaattcaaattactccacatggtgacacgctgatattctccagAAAGTGGATCCTCAGAAGGCCGAAGCTATCGATCAATTTTTACTGAAGTTGAGATCTCTTGGGTCAGGAGAGGCTGCATTCACTTTTATTCTTGATGATC
species | Zea mays |
transcript | GRMZM2G351582_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTATTATGCGAGCTGTGGATGAGCTGCAGGCTCTTCAAGATGAACGGAAG AAAGTGGATCCTCAGAAGGCCGAAGCTATCGATCAATTTTTACTGAAGT-GEST: gi|20803327|gb|BQ294377.1|BQ294377
genomic: TTATTATGCGAGCTGTGGATGAGCTGCAGGCTCTTCAAGATGAACGGAAGgtgaatcttt ... tattctccagAAAGTGGATCCTCAGAAGGCCGAAGCTATCGATCAATTTTTACTGAAGTTG
EST: AAGATGAACGGAAG AAAGTGGATCCTCAGAAGGCCGAAGCTATCGATCAATTGTTACTGAAGTTGEST: gi|26456768|gb|CA828351.1|CA828351
genomic: AAGATGAACGGAAGgtgaatcttt ... tattctccagAAAGTGGATCCTCAGAAGGCCGAAGCTATCGATCAATTTTTACTGAAGTTG
EST: TTATTATGCGAGCTGTGGATGAGCTGCAGGCTCTTCAAGATGAACGGAAG AAAGTGGATCCTCAGAAGGCCGAAGCTATCGATCAATTTTTACTGAAGTTG
genomic: TTATTATGCGAGCTGTGGATGAGCTGCAGGCTCTTCAAGATGAACGGAAGgtgaatcttt ... tattctccagAAAGTGGATCCTCAGAAGGCCGAAGCTATCGATCAATTTTTACTGAAGTTG
gcttggcttttggaattcaaattactccacatggtgacacgctgatattctccagAAAGTGGATCCTCAGAAGGCCGAAGCTATCGATCAATTTTTACTGAAGTTGAGATCTCTTGGGTCAGGAGAGGCTGCATTCACTTTTATTCTTGATGATC
cgctgat putative branch site (score: 124)
tattctcc CT-rich tract
aattcaaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaatctttggtattttttatgcttggcttttggaattcaaattactccacatggtgacacgctgatattctccagAAAGTGGATCCTCAGAAGGCCGAAGCTATCGATCAATTTTTACTGAAGTTGAGATCTCTTGGGTCAGGAGAGGCTGCATTCACTTTTATTCTTGATGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG