Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggccgttctttactccaaacacaatctcccttctgtacagctaaaatttgcagaaatggcaattcaaccaacacagtatatcgttggctcatggcaatggctgctaacagGTATTTCGGCTGAGGTTGCTTGGCGACTACCATCATTCTACCCGCATCGCTTTTGTGGAATTCGTGATG

Basic information

species Zea mays
transcript GRMZM2G349794_T01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G349794_T01 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os08g02330.1 (Oryza sativa), 3'ss of exon 7
gttggccgttctttactccaaacacaatctcccttctgtacagctaaaatttgcagaaatggcaattcaaccaacacagtatatcgttggctcatggcaatggctgcta-acagGTATTTCGGCTGAGGTTGCTTGGCGACTACCATCATTCTACCCGCATCGCTTTTGTGGAATTCGTGATG
|||||   ||  | | |||  |    | | |  ||||  |||   |     | | |||||| ||||||||  ||||          ||  ||||| |||||  |  ||  |||||||| |||||||||||||||||| ||||||||||||||||| ||||| || |||||||| || ||||||
gttggtgatttgtcattccttatgtcaac-cttttcttcacaatca-----tactgaaatg-caattcaaggaacaac--------ttccctcattgcaataccacctttacagGTATATCGGCTGAGGTTGCTTGGTGACTACCATCATTCTACTCGCATTGCCTTTGTGGAGTTTGTGATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atggcaattcaaccaacacagtatatcgttggctcatggcaatggctgctaacagGTATTTCGGCTGAGGTTGCTTGGCGACTACCATCATTCTACCCGCATCGCTTTTGTGGAATTCGTGATG
     aattcaa  TA-rich tract