1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaagtgttagttgaggtttcgctgtccttaaaactgtcattttatcagtaggatcctgtccagttctttttgttttattaagaaacgctatagaaatctgatgttttggttctgggcctgtaacatgcagGATGATGGCTGCAGATGCCCTGACGGATTCAAGGGTGATGGCAAGCACAAATGTGAAG
species | Zea mays |
transcript | GRMZM2G347541_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GAGGGTGCTGGAAAGATACCAAGAATGGTCGGACATACTCTGCCTGTACT GATGATGGCTGCAGATGCCCTGACGGATTCAAGGGTGATGGCAAGCACAAAEST: gi|32935750|gb|CF040562.1|CF040562
genomic: GAGGGTGCTGGAAAGATACCAAGAATGGTCGGACATACTCTGCCTGTACTgtaagtgtta ... taacatgcagGATGATGGCTGCAGATGCCCTGACGGATTCAAGGGTGATGGCAAGCACAAA
EST: GAGGGTGCTGGAAAGATACCAAGAATGGTCGGACATACTCTGCCTGTACT GATGATGGCTGCAGATGCCCTGACGGATTCAAGGGTGATGGCAAGCACAAAEST: gi|67021468|gb|CO450217.1|CO450217
genomic: GAGGGTGCTGGAAAGATACCAAGAATGGTCGGACATACTCTGCCTGTACTgtaagtgtta ... taacatgcagGATGATGGCTGCAGATGCCCTGACGGATTCAAGGGTGATGGCAAGCACAAA
EST: GAGGGTGCTGGAAAGATACCAAGAATGGTCGGACATACTCTGCCTGTACT GATGATGGCTGCAGATGCCCTGACGGACTCAAGGGTGATGGCAAGCACAAAEST: gi|211224453|gb|FL435606.1|FL435606
genomic: GAGGGTGCTGGAAAGATACCAAGAATGGTCGGACATACTCTGCCTGTACTgtaagtgtta ... taacatgcagGATGATGGCTGCAGATGCCCTGACGGATTCAAGGGTGATGGCAAGCACAAA
EST: GGGTGGCTGG-AAGATACCAGAAAATGTTCGGACATACTCTGCCTGTACT GATGATGGCTGCAGATGCCCTGACGGATTCAAGGGTGATGGCAAGCACAAAEST: gi|67028179|gb|CO456928.1|CO456928
genomic: GGGT-GCTGGAAAGATACCA-AGAATGGTCGGACATACTCTGCCTGTACTgtaagtgtta ... taacatgcagGATGATGGCTGCAGATGCCCTGACGGATTCAAGGGTGATGGCAAGCACAAA
EST: GAGGGTGCTGGAAAGATACCAAGAATGGTCGGACATACTCTGCCTGTACT GATGATGGCTGCAGATGCCCTGACGNGACTCA-GGGTGATGGCAAGCANCAEST: gi|76292778|gb|DV032346.1|DV032346
genomic: GAGGGTGCTGGAAAGATACCAAGAATGGTCGGACATACTCTGCCTGTACTgtaagtgtta ... taacatgcagGATGATGGCTGCAGATGCCCTGACG-GATTCAAGGGTGATGGCAAGCA-CA
EST: GAGGGTGCTGGAAAGATACCAAGAATGGTCGGACATACTCTGCCTGTACT GATGATGGCTGCAGATGCCCTGACGGATTCAAGGGTGATGGCAAGCACAAAEST: gi|76288308|gb|DV027876.1|DV027876
genomic: GAGGGTGCTGGAAAGATACCAAGAATGGTCGGACATACTCTGCCTGTACTgtaagtgtta ... taacatgcagGATGATGGCTGCAGATGCCCTGACGGATTCAAGGGTGATGGCAAGCACAAA
EST: GAGGGTGCTGGAAAGATACCAAGAATGGTCGGACATACTCTGCCTGTACT GATGATGGCTGCAGATGCCCTGACGGATTCAAGGGTGATGGCAAGCACAAAEST: gi|211301945|gb|FL333154.1|FL333154
genomic: GAGGGTGCTGGAAAGATACCAAGAATGGTCGGACATACTCTGCCTGTACTgtaagtgtta ... taacatgcagGATGATGGCTGCAGATGCCCTGACGGATTCAAGGGTGATGGCAAGCACAAA
EST: GAGGGTGCTGGAAAGATACCAAGAATGGCCGGACATACTCTGCCTGTACT GATGATGGCTGCAGATGCCCTGACGGATTCAAGGGTGATGGCAAGCACAAA
genomic: GAGGGTGCTGGAAAGATACCAAGAATGGTCGGACATACTCTGCCTGTACTgtaagtgtta ... taacatgcagGATGATGGCTGCAGATGCCCTGACGGATTCAAGGGTGATGGCAAGCACAAA
tattaagaaacgctatagaaatctgatgttttggttctgggcctgtaacatgcagGATGATGGCTGCAGATGCCCTGACGGATTCAAGGGTGATGGCAAGCACAAATGTGAAG
ctgtaac putative branch site (score: 279)
tatagaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgttagttgaggtttcgctgtccttaaaactgtcattttatcagtaggatcctgtccagttctttttgttttattaagaaacgctatagaaatctgatgttttggttctgggcctgtaacatgcagGATGATGGCTGCAGATGCCCTGACGGATTCAAGGGTGATGGCAAGCACAAATGTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG