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...ttctggctttgtagtaacctgggatacttagtgcactttcttttaatccaaaaaaagaatgtgatgctcatgactgtctttgatttgtcctctggtgtagTACCGATAATATATCAAGTTCATCGGGCACGTGATGGATCCAGCTTTGCCACAAGAAAAGTGGAGGCAAAGCAGAAGGGCCTAGTTGTATTCACCTTGAT
species | Zea mays |
transcript | GRMZM2G344476_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AATGGTGCATAGTTTGCATGCAATTTTTCTTGTTGCTGGAGACAATAACA TACCGATAATATATCAAGTTCATEST: gi|148956464|gb|EC902291.2|EC902291
genomic: AATGGTGCATAGTTTGCATGCAATTTTTCTTGTTGCTGGAGACAATAACAgtaaggtttc ... tctggtgtagTACCGATAATATATCAAGTTCAT
EST: AATGGTGCATAGTTTGCATGCAATTTTTCTTGGTGCTGGAGACAATAACA TACCGATAATATATCAAGTTCEST: gi|149112589|gb|EE191373.2|EE191373
genomic: AATGGTGCATAGTTTGCATGCAATTTTTCTTGTTGCTGGAGACAATAACAgtaaggtttc ... tctggtgtagTACCGATAATATATCAAGTTC
EST: AATGGTGCATAGTTTGCATGCAATTTTTCTTGTTGCTGGAGACAATAACA TACCGATAATATATCAAGTTCATCGGGCACGTGATGGATCCAGCTTTGCCAEST: gi|50331303|gb|CO526429.1|CO526429
genomic: AATGGTGCATAGTTTGCATGCAATTTTTCTTGTTGCTGGAGACAATAACAgtaaggtttc ... tctggtgtagTACCGATAATATATCAAGTTCATCGGGCACGTGATGGATCCAGCTTTGCCA
EST: AATGGTGCATAGTTTGCATGCAATTTTTCTTGTTGCTGGAGACAATAACA TACCGATAATATATCAAGTTCATCGGGCACGTGATGGATCCAGCTTTGCCAEST: gi|148958992|gb|EE010517.2|EE010517
genomic: AATGGTGCATAGTTTGCATGCAATTTTTCTTGTTGCTGGAGACAATAACAgtaaggtttc ... tctggtgtagTACCGATAATATATCAAGTTCATCGGGCACGTGATGGATCCAGCTTTGCCA
EST: ATGGTGCATAGTTTGCATGCAATTTTTCTTTGTTGCTGGAGACAAAAACA TACCGATAATATATCAAGTTCATCEST: gi|148944150|gb|EC889238.2|EC889238
genomic: ATGGTGCATAGTTTGCATGCAATTTTTCTT-GTTGCTGGAGACAATAACAgtaaggtttc ... tctggtgtagTACCGATAATATATCAAGTTCATC
EST: AATGGTGCATAGTTTGCATGCAATTTTTCTTGTTGCTGGAGACAATAACA TACCGATAATATATCAAGTTCATCGGGCACGTGATGGATCCAGCTTTGCCA
genomic: AATGGTGCATAGTTTGCATGCAATTTTTCTTGTTGCTGGAGACAATAACAgtaaggtttc ... tctggtgtagTACCGATAATATATCAAGTTCATCGGGCACGTGATGGATCCAGCTTTGCCA
atccaaaaaaagaatgtgatgctcatgactgtctttgatttgtcctctggtgtagTACCGATAATATATCAAGTTCATCGGGCACGTGATGGATCCAGCTTTGCCACAAGAAAAGTGGAGGCAAAGCAGAAGGGCCTAGTTGTATTCACCTTGAT
tttgtcctct CT-rich tract
aaaaaagaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttctggctttgtagtaacctgggatacttagtgcactttcttttaatccaaaaaaagaatgtgatgctcatgactgtctttgatttgtcctctggtgtagTACCGATAATATATCAAGTTCATCGGGCACGTGATGGATCCAGCTTTGCCACAAGAAAAGTGGAGGCAAAGCAGAAGGGCCTAGTTGTATTCACCTTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
ttctggc
- - - - - - - - - - - - - - - -tgcactt
- - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatgct