1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtataaagttttcgatgttaatagatgccactatagtcaacatacttttttggtccatagagatgccgttagttttggatgatatccacctatctgatgacatttggcatctttgtatttcaatgcagACTCTTCCAAAATTGGTAGATGCTACAAGCCTGGAGAATAAGAACGCCAGATCCGTTTCTTGTGGAGCTCGCCATAGTGCTATTATAACAG
species | Zea mays |
transcript | GRMZM2G337819_T02 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTGGACAGCTTGGCACTGGTTCTGATCAGGCTGAG ACTCTTCCAAAATTGGTAGATGCTACAAGCCTGGAGAATAAGAACGCCAGAEST: gi|76011277|gb|DT938447.1|DT938447
genomic: TTGGACAGCTTGGCACTGGTTCTGATCAGGCTGAGgtataaagtt ... ttcaatgcagACTCTTCCAAAATTGGTAGATGCTACAAGCCTGGAGAATAAGAACGCCAGA
EST: TTGGAGGAAACCAGTTTGGACAGCTTGGCACTGGTTCTGATCAGGCTGAG ACTCTTCCAAAATTGGTAGATGCTACAAGCCTGGAGAATAAGAACGCCAGAEST: gi|32828087|gb|CD967765.1|CD967765
genomic: TTGGAGGAAACCAGTTTGGACAGCTTGGCACTGGTTCTGATCAGGCTGAGgtataaagtt ... ttcaatgcagACTCTTCCAAAATTGGTAGATGCTACAAGCCTGGAGAATAAGAACGCCAGA
EST: TTGGAGGAAACCAGTTTGGACAGCTTGGCACTGGTTCTGATCAGGCTGAG ACTCTTCCAAAATTGGTAGATGCTACAAGCCTGGAGAATAAGAACGCCAGAEST: gi|88748572|gb|DY532713.1|DY532713
genomic: TTGGAGGAAACCAGTTTGGACAGCTTGGCACTGGTTCTGATCAGGCTGAGgtataaagtt ... ttcaatgcagACTCTTCCAAAATTGGTAGATGCTACAAGCCTGGAGAATAAGAACGCCAGA
EST: TTGGAGGAAACCAGTTTGGACAGCTTGGCACTGGTTCTGATCAGGCTGAG ACTCTTCCAAAATTGGTAGATGCTACAAGCCTGGAGAATAAGAACGCCAGAEST: gi|213171190|gb|FM184381.1|FM184381
genomic: TTGGAGGAAACCAGTTTGGACAGCTTGGCACTGGTTCTGATCAGGCTGAGgtataaagtt ... ttcaatgcagACTCTTCCAAAATTGGTAGATGCTACAAGCCTGGAGAATAAGAACGCCAGA
EST: TTGGAGGAAACCAGTTTGGACAGCTTGGCACTGGTTCTGATCAGGCTGAG ACTCTTCCAAAATTGGTAGATGCTACAAGCCTGGAGAATAAGAACGCCAGA
genomic: TTGGAGGAAACCAGTTTGGACAGCTTGGCACTGGTTCTGATCAGGCTGAGgtataaagtt ... ttcaatgcagACTCTTCCAAAATTGGTAGATGCTACAAGCCTGGAGAATAAGAACGCCAGA
tttggatgatatccacctatctgatgacatttggcatctttgtatttcaatgcagACTCTTCCAAAATTGGTAGATGCTACAAGCCTGGAGAATAAGAACGCCAGATCCGTTTCTTGTGGAGCTCGCCATAGTGCTATTATAACAG
atctgat putative branch site (score: 4)
tttgtattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtataaagttttcgatgttaatagatgccactatagtcaacatacttttttggtccatagagatgccgttagttttggatgatatccacctatctgatgacatttggcatctttgtatttcaatgcagACTCTTCCAAAATTGGTAGATGCTACAAGCCTGGAGAATAAGAACGCCAGATCCGTTTCTTGTGGAGCTCGCCATAGTGCTATTATAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT